Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  459 bits (1182), Expect = e-134
 Identities = 240/457 (52%), Positives = 319/457 (69%), Gaps = 4/457 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SFA+L L   LLA LE + + +MT IQA SLP  L G D+I QGKTGSGKTAAFGL +LS
Sbjct: 22  SFASLPLSAGLLATLEQLEYRSMTAIQAASLPLALAGHDLIAQGKTGSGKTAAFGLTLLS 81

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            L+ +R  +QALVLCPTREL++QV  ++R L R   N+++LTLCGG PM PQI SLE+GA
Sbjct: 82  RLDPRRLEIQALVLCPTRELSEQVTQELRRLARGEENVRILTLCGGSPMKPQITSLENGA 141

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
           HI+VGTPGR++DHL +  + L+ LNTLVLDEADRML+MGF +A+  +    PAERQTLLF
Sbjct: 142 HIVVGTPGRLMDHLERGSLTLAALNTLVLDEADRMLDMGFHDAIAWVARRCPAERQTLLF 201

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244
           SATYP  I ++AQ   R    +K+   H+ S IRQ FY+V+    R +A+ TLL H++P 
Sbjct: 202 SATYPPGIAELAQRFLRQPKEVKLAEQHEGSKIRQRFYEVK-HEERLQAVCTLLKHYRPA 260

Query: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
           S++ FCNTK++ +++   LH  GFS + L+GD+EQRERDQ L+QFAN+S S+LVATDVAA
Sbjct: 261 STLAFCNTKQQCRDLVQVLHGQGFSALTLNGDLEQRERDQVLIQFANRSCSVLVATDVAA 320

Query: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364
           RGLD+  L+AV N D++ DPE+++HRIGRTGR    G A S  S  +  RV  I + M +
Sbjct: 321 RGLDIAQLEAVINVDVTPDPEIYIHRIGRTGRGDEDGWALSLCSPRDRRRVETIAQMMGM 380

Query: 365 AIEPSTLPQPAAG-ARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
            +E  TL    +G   P    M T+ + GG+KDK+RPGD+LGALT +     E +GKI +
Sbjct: 381 ELEWHTLGSLQSGNEAPLVPPMATLLLLGGRKDKLRPGDVLGALTGEAGFAKEQVGKITV 440

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
                YVAV + IA +A+ K+A  K+KG+  + RLL+
Sbjct: 441 TEQVTYVAVARNIAREAVRKLA--KVKGKSVKTRLLE 475