Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  290 bits (741), Expect = 1e-82
 Identities = 154/372 (41%), Positives = 227/372 (61%), Gaps = 1/372 (0%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           + ++FA L L   +L  L  +G+ T + IQA+ +P +++G+D++G  +TG+GKTAAF L 
Sbjct: 4   SVDTFAQLGLSEPILQALTDVGYETPSSIQAECIPLLMEGKDLLGMAQTGTGKTAAFALP 63

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           +L  L+V +   QALVL PTRELA QVA   +   + +    VL + GG  +G Q+  L+
Sbjct: 64  LLQKLDVTQRFPQALVLAPTRELAIQVAEACQKYAKHLPGFHVLPIYGGQSLGIQLKQLQ 123

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            GAH+++GTPGR++DHL +  +DLS L TLVLDEAD ML MGF + +E I+   PAERQT
Sbjct: 124 RGAHVIIGTPGRVMDHLERKSLDLSRLKTLVLDEADEMLRMGFIDDVEWILEHIPAERQT 183

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVE-ATHDTSSIRQYFYKVEGSAARDEALETLLLH 240
            LFSAT P  I ++AQ   R+   +K++ AT   S+I+Q +++V G    D     + + 
Sbjct: 184 ALFSATMPEQIRRVAQKYLRDPQEVKIKSATSTVSAIQQRYWQVSGLHKLDALTRIMEVE 243

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
               ++++F  TK   + +A  L   G++   L+GDM Q  R++ + Q  +  + I++AT
Sbjct: 244 DSLDAAIIFVRTKTATEELAQKLEARGYAAAALNGDMNQASRERVIEQLKSGGLDIVIAT 303

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARG+DV  +  V NYD+  D E +VHRIGRTGRAG  G A  F S  E   +  I++
Sbjct: 304 DVAARGIDVPRVSHVINYDIPYDVEAYVHRIGRTGRAGRTGTAILFVSPREMRMLRTIEK 363

Query: 361 YMDIAIEPSTLP 372
                I P  LP
Sbjct: 364 VTRQNISPLRLP 375



 Score = 35.0 bits (79), Expect = 7e-06
 Identities = 18/67 (26%), Positives = 35/67 (52%)

Query: 384 NMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNK 443
           NMV  +I+ G+     P DI+G + ++ ++ + +IG I LF   + V +   +   AL  
Sbjct: 500 NMVRYRIEVGRNQGATPKDIVGCIANEADIQSRYIGHIALFDEYSTVELPDSLPKDALML 559

Query: 444 IANGKMK 450
           +   ++K
Sbjct: 560 LKEVEIK 566