Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

 Score =  263 bits (672), Expect = 1e-74
 Identities = 147/372 (39%), Positives = 220/372 (59%), Gaps = 4/372 (1%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           +A +FA L + P +L  +  +G+ + T IQA ++PA++ G DV+G  +TG+GKTAAF + 
Sbjct: 11  SAATFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP 70

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           +LS +++     QALVL PTRELA QVA      G  +  + VL + GG     Q+  L 
Sbjct: 71  MLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            GA ++VGTPGR++DHL +  +DLS ++ LVLDEAD ML MGF + +E I++  P  +Q 
Sbjct: 131 RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQV 190

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEA-THDTSSIRQYFYKVEGSAARDEALETLLLH 240
            LFSAT P +I +++     +   +  +A T    +I Q + +V   A + +AL  +L  
Sbjct: 191 ALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV---ARKMDALTRVLEV 247

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
               + +VF  TK+  + +A+ L   GFS   + GD+ Q +R++ +    +  I ILVAT
Sbjct: 248 EPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVAT 307

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F S  E + +  I++
Sbjct: 308 DVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEK 367

Query: 361 YMDIAIEPSTLP 372
                +  + LP
Sbjct: 368 ATRQTLTEAQLP 379



 Score = 42.0 bits (97), Expect = 5e-08
 Identities = 20/68 (29%), Positives = 38/68 (55%)

Query: 384 NMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNK 443
           ++ T ++  GK+ K+ PG I+GA+ ++G L     G+I + P  + V +  K+    L K
Sbjct: 468 DLTTYRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLPRATLKK 527

Query: 444 IANGKMKG 451
           +A  ++ G
Sbjct: 528 LAQTRISG 535