Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., DEAD/DEAH box helicase from Methanococcus maripaludis S2

 Score =  281 bits (720), Expect = 3e-80
 Identities = 154/370 (41%), Positives = 235/370 (63%), Gaps = 4/370 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQ-DVIGQGKTGSGKTAAFGLGVL 63
           SF  L L  E+L  LE  GF   TPIQ Q++P +++G+ D++GQ +TG+GKTAAFG+ +L
Sbjct: 3   SFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIPIL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
             ++      QAL+L PTRELA QVA +I ++ +    + V  + GG  +  QI  L  G
Sbjct: 63  ETIDEHSRNTQALILAPTRELAIQVAEEIDSI-KGSKRLNVFPVYGGQSIDRQIRELRRG 121

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
             I+VGTPGRILDH+S+  I L  ++ +VLDEAD ML MGF + +E I+ +   +++ LL
Sbjct: 122 VQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRMLL 181

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIR-QYFYKVEGSAARDEALETLLLHHQ 242
           FSAT P SI ++A++  R   +IKV+    T+++  Q FY++  S  + E L  ++   +
Sbjct: 182 FSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIH-SRDKFELLSRIIDTEK 240

Query: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
               ++FC TK +V  VA+ L++ G++   LHGDM Q +R++ L +F  K I++LVATDV
Sbjct: 241 EFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDV 300

Query: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362
           AARG+D+++L  V N+D+ ++PE +VHRIGRTGRAG +G A +F   +E  +   I +  
Sbjct: 301 AARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIA 360

Query: 363 DIAIEPSTLP 372
              I+   +P
Sbjct: 361 KTEIKREEVP 370