Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  274 bits (701), Expect = 5e-78
 Identities = 151/371 (40%), Positives = 219/371 (59%), Gaps = 3/371 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F  L L   LL  L+ +G+   TPIQ+ S+  ++ G+D++GQ +TG+GKT AF L +L+
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            +   +   Q LVL PTRELA QVA    +  + + N  VL + GG  M  Q+ +L+ G 
Sbjct: 67  KVT-SQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            ++VGTPGR++DH+ +  + L  L  LVLDEAD ML+MGF + +E I+   P +RQ  LF
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALF 185

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P  I+++A    +NA  I + A+H T  SI Q F +V     + EAL  +L     
Sbjct: 186 SATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQV-SQHNKLEALVRVLEVENT 244

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
              ++F  T+     +A+ L   G++   LHGDM Q+ R++A+ Q  N  + IL+ATDVA
Sbjct: 245 EGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVA 304

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G+A  F +  E   +  I+   +
Sbjct: 305 ARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATN 364

Query: 364 IAIEPSTLPQP 374
             I P  +P P
Sbjct: 365 SRISPMKVPSP 375



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 34/68 (50%)

Query: 390 IDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKM 449
           ID G+++ V  G+I+GA+ ++  + + +IG I L+     V +   +    L  +   ++
Sbjct: 494 IDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGMPKDVLQHLKKVRV 553

Query: 450 KGRQFRAR 457
            G+    R
Sbjct: 554 CGKPLNIR 561