Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 535 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  259 bits (662), Expect = 2e-73
 Identities = 155/400 (38%), Positives = 228/400 (57%), Gaps = 11/400 (2%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF+AL L   L   +   G+ T +PIQAQ++PA+L G+DV+   +TG+GKTA F L +L 
Sbjct: 2   SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 65  NL----NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
            L      K  + +ALVL PTRELA QV   + T G+ +  ++   + GG+P+ PQI  L
Sbjct: 62  LLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLP-LRSAVVFGGVPINPQINKL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
            HG  +LV TPGR+LD + ++ +  ++L  LVLDEADRML+MGF   ++ I+A  PA+RQ
Sbjct: 121 RHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALETLLL 239
            L+FSAT+   I ++A+ +  + + I V   +  ++ ++Q+   V+    +   L  L+ 
Sbjct: 181 NLMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVD-KTQKSALLIQLIK 239

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
                  +VF  TK     +A +L Q+  S   +HG+  Q  R +AL  F +  + +LVA
Sbjct: 240 QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           TD+AARGLD+D L  V N+DL   PE +VHRIGRTGRAG+ G A S  S  E   +  I+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359

Query: 360 EYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVR 399
             ++  +E     Q   G  P  A   T     GK  KV+
Sbjct: 360 RLINRVLE----RQEVEGFSPVHALPETTLNPQGKDTKVK 395