Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  255 bits (651), Expect = 2e-72
 Identities = 152/405 (37%), Positives = 228/405 (56%), Gaps = 19/405 (4%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SFA L +   L   L  +G+ + TP+QA ++PA+L G+DV+    TGSGKTAAF L +L 
Sbjct: 10  SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69

Query: 65  NLNVKRFR------VQALVLCPTRELADQVATDIRTLGRAIH---NIKVLTLCGGMPMGP 115
            L+  +        V+ LVL PTRELA QVA     L  A H    +K++   GG+ +  
Sbjct: 70  RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSF--LSYASHFNGQLKIVAAFGGVSVNL 127

Query: 116 QIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAA 175
           Q+ SL  GA +LV TPGR+LD L+ + + L++++  VLDEADRML +GF E LE ++AA 
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAAL 187

Query: 176 PAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALE 235
           P ++QTLLFSAT+P  +  +   +    L   +++  + S+I Q    V     +   L 
Sbjct: 188 PRQKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE-STIEQRVITVNREQ-KTALLA 245

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            L+  HQ + +++F + K    ++A  L + G S    HGD  Q  R + L  F N  IS
Sbjct: 246 HLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEIS 305

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
           +L+ATD+AARG+D+D L  V N+DL R P  ++HRIGR+GRAG  GLA +  S  E +  
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365

Query: 356 AQIDEYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRP 400
             I++   I +    +P   A A       + +++   +K + +P
Sbjct: 366 GVIEKKNKIKLVREQIPGFEANAE------IPLEVLAQEKPQAKP 404