Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  253 bits (645), Expect = 1e-71
 Identities = 149/398 (37%), Positives = 227/398 (57%), Gaps = 8/398 (2%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           F + +  PE+L  +   G+  MTPIQ Q++PAI +GQDV+   +TG+GKTAAF L +L  
Sbjct: 3   FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62

Query: 66  L-----NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
           +        +   + L+L PTRELA QVA ++    + + N  VLT+ GG+ +  Q   L
Sbjct: 63  MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYL-NFSVLTIYGGVKVETQAQKL 121

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           + GA I+V TPGR+L+HL+   + LS ++ LVLDEADRML+MGF   ++ I+ A   +RQ
Sbjct: 122 KRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLL 239
            LLFSAT+ ++++++A  +     +I  +  + T+ ++ Q  Y VE    R E L  L+ 
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKR-ELLSELIG 240

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
                  +VF  T+     +   L+  G     +HG+  Q  R +AL +F +  + +LVA
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           T+VAARGLD+ +L+ V N+DL    E +VHRIGRTGRAG  G+A SF S  E   +A I+
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 360 EYMDIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDK 397
           + +   I   T+P    G+R      +  +    KK +
Sbjct: 361 KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQ 398