Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Klebsiella michiganensis M5al

 Score =  279 bits (713), Expect = 2e-79
 Identities = 156/368 (42%), Positives = 219/368 (59%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +FA L LK  +L  L  +G+   +PIQA+ +P +L G+DV+G  +TGSGKTAAF L +L+
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           NL+ +    Q LVL PTRELA QVA  +    + +  + V+ L GG     Q+ +L  G 
Sbjct: 67  NLDPELRAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            I+VGTPGR+LDHL +  +DLS+L+ LVLDEAD ML MGF E +E I+A  P   QT LF
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244
           SAT P +I +I +   +    ++++++  T       Y       ++EAL   L      
Sbjct: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFD 246

Query: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
           ++++F  TK     VA+AL +SG+S   L+GDM Q  R+Q L +  +  + IL+ATDVAA
Sbjct: 247 AAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQSLREQTLERLKDGRLDILIATDVAA 306

Query: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364
           RGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F  + E   +  I+  M +
Sbjct: 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 366

Query: 365 AIEPSTLP 372
            I    LP
Sbjct: 367 TIPEVELP 374



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 18/76 (23%), Positives = 40/76 (52%)

Query: 384 NMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNK 443
           +M   +I+ G+ D V    I+GA+ ++G++++ +IG I LF   + + + K +  + L  
Sbjct: 492 DMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELPKGMPGEVLQH 551

Query: 444 IANGKMKGRQFRARLL 459
               ++  +    +LL
Sbjct: 552 FTRTRILNKPMNMQLL 567