Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 520 a.a., RNA helicase from Herbaspirillum seropedicae SmR1

 Score =  258 bits (660), Expect = 2e-73
 Identities = 150/388 (38%), Positives = 226/388 (58%), Gaps = 20/388 (5%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF+AL L  E++  +   G+ + TPIQAQ++PA+L G D++   +TG+GKTA F L +L 
Sbjct: 2   SFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQ 61

Query: 65  NLNVK-------RFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQI 117
            L+            ++AL+L PTRELA QV   +R  G+ +  +    + GG+ + PQI
Sbjct: 62  RLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLP-LTSACIFGGVGINPQI 120

Query: 118 GSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPA 177
             L+ G  ILV TPGR+LDH+ +  ++L  +  LVLDEADRML+MGF   +  ++AA P 
Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180

Query: 178 ERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALET 236
           +RQ LLFSAT+   I+++A S+  N  +I+V   + T   I Q  + V+    +   L  
Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRD-KKHPMLAH 239

Query: 237 LLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISI 296
           L+  HQ    +VF  TK     + + L + G + + +HG+  Q  R +AL +F +  ++ 
Sbjct: 240 LIKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTA 299

Query: 297 LVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVA 356
           L+ATD+AARG+D+D L  V NYDL   PE +VHRIGRTGRAG+ G A S    +E   + 
Sbjct: 300 LIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLH 359

Query: 357 QIDEYM--DIAIE--------PSTLPQP 374
            I+ ++  +I +E        P+  PQP
Sbjct: 360 DIERFIKREIPVEVIAGFEPDPTAKPQP 387