Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 532 a.a., ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  301 bits (771), Expect = 3e-86
 Identities = 163/379 (43%), Positives = 239/379 (63%), Gaps = 2/379 (0%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           +  SF  L L+ ELL  +E +GF   +PIQ+ ++P +L+G+DVIGQ +TG+GKTAAFGL 
Sbjct: 3   SVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFGLP 62

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           +L  ++     VQALVLCPTRELA QVA  +  L + +  +++L++ GG P+ PQ  +L 
Sbjct: 63  LLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASALR 122

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            GA ++VGTPGRILDH+++  + L  +   VLDEAD ML+MGF+E +E I++  P   Q+
Sbjct: 123 RGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWVQS 182

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLH 240
             FSAT P  I ++A+   R   +++V     T ++  Q +++V     R +A+  +   
Sbjct: 183 AFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVR-PFRRVDAVCRIFDA 241

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
           + P  ++VF  TK+ V  +A AL Q G     LHGD+ Q +R++ + +F    IS+LVAT
Sbjct: 242 YIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVAT 301

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLDVD++D V N+DL  DPE +VHRIGRTGRAG  G AFSF +  + Y++  I  
Sbjct: 302 DVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQR 361

Query: 361 YMDIAIEPSTLPQPAAGAR 379
                I+   +P  A  +R
Sbjct: 362 VTGSRIDRRAMPTAADASR 380



 Score = 32.7 bits (73), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 33/59 (55%)

Query: 393 GKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKMKG 451
           G++ ++ P D++GA+  +  ++   IG I +    ++V V   IA + ++ +   +++G
Sbjct: 456 GRRMRITPRDLVGAIAGETGISGRSIGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRG 514