Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  252 bits (643), Expect = 2e-71
 Identities = 143/345 (41%), Positives = 203/345 (58%), Gaps = 7/345 (2%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           F  L L P  L  +   G+ T TPIQAQ++P  L GQDV+G  +TG+GKTAAF L ++  
Sbjct: 4   FTDLGLSPTTLQAVADTGYTTATPIQAQAIPVALAGQDVLGIAQTGTGKTAAFTLPLIDR 63

Query: 66  LNVKRFRVQ---ALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           L   R + +   ALV+ PTRELADQVA       +    +    L GG+  G Q   L+ 
Sbjct: 64  LQSGRAKARMPRALVIAPTRELADQVAASFEKYAKGT-KLSWALLIGGVSFGDQEKKLDR 122

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           G  +L+ TPGR+LDH  + ++ ++ +  LV+DEADRML+MGF   +E I    P ++QTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLMTGVQFLVVDEADRMLDMGFIPDIERIFKMTPPKKQTL 182

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGS--AARDEALETLLL 239
            FSAT P  I ++ +   R+ + I+V     T++ I Q   KV  S   A+  AL  L+ 
Sbjct: 183 FFSATMPPEITRLTKQFLRDPVRIEVARPATTNANITQLLVKVPSSDPKAKRLALRALIE 242

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
                + +VFCN K EV  VA +L   G+    +HGD++Q +R + L  F + ++ ILVA
Sbjct: 243 KAGIETGIVFCNRKTEVDIVAKSLKVHGYDAAPIHGDLDQTQRMKTLADFRSGALKILVA 302

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAF 344
           +DVAARGLD+  +  VFNYD+    + +VHRIGRTGRAG  G+ +
Sbjct: 303 SDVAARGLDIPAVSHVFNYDVPHHADDYVHRIGRTGRAGRTGITY 347