Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  278 bits (710), Expect = 5e-79
 Identities = 146/359 (40%), Positives = 226/359 (62%), Gaps = 7/359 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAIL-KGQDVIGQGKTGSGKTAAFGLGVL 63
           +F  L + PE+   +E MG+    P+Q + +P +L +  DV+   +TG+GKTAAFGL +L
Sbjct: 3   TFEELGVSPEIRKAIEEMGYENPMPVQEEVIPYLLGENNDVVALAQTGTGKTAAFGLPLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
             ++VK    Q+L+LCPTREL  Q+A D+    + I  +KVL + GG  +  QI SL+ G
Sbjct: 63  QQIDVKNRVPQSLILCPTRELCLQIAGDLNDYSKYIDGLKVLPVYGGSSIDSQIRSLKRG 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LD + +  + LS ++ +V+DEAD ML MGF +++ AI+A  P ER TLL
Sbjct: 123 VHIIVATPGRLLDLMERKTVSLSTVHNIVMDEADEMLNMGFTDSINAILADVPKERNTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKV-EATHDTSSIRQYFYKVEGSAARDE--ALETLLLH 240
           FSAT    I +I+++  +NA  I +      TS+++   Y V+   A+D+  AL+ ++ +
Sbjct: 183 FSATMSPEIARISKNYLQNAKEITIGRKNESTSNVKHVAYTVQ---AKDKYAALKRIVDY 239

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
           +     ++FC T++E Q +AD L Q G++   LHG++ Q +RD  + +F  +++ +LVAT
Sbjct: 240 YPQIYGIIFCRTRKETQEIADKLMQEGYNADSLHGELSQAQRDAVMQKFRIRNLQLLVAT 299

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           DVAARGLDVD+L  V NY L  D E + HR GRTGRAG  G + +  +  E  ++ +I+
Sbjct: 300 DVAARGLDVDDLTHVINYGLPDDTESYTHRSGRTGRAGKTGTSIAIINLREKGKLREIE 358