Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score =  265 bits (678), Expect = 2e-75
 Identities = 151/365 (41%), Positives = 219/365 (60%), Gaps = 11/365 (3%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F    L P++L  ++  G+   TPIQ Q++P +L G+D++G  +TG+GKTA+F L ++ 
Sbjct: 12  TFDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQ 71

Query: 65  NL--------NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
            L        +  R  V+AL+L PTRELADQVA +++   +    ++   + GG+ M PQ
Sbjct: 72  RLLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTA-LRSAVVFGGVDMNPQ 130

Query: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
              L  G  IL+ TPGR+LDH+ +   +L ++  LVLDEADRML+MGF   L+ I+   P
Sbjct: 131 SEQLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLP 190

Query: 177 AERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALE 235
            ERQTLLFSAT+   I+++A +  RN   I+V  ++ T++ + Q  Y+V     +  A+ 
Sbjct: 191 KERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEV-AEGDKTGAVV 249

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            L+        +VFCN+K     +A +L + G     +HGD  Q ER QAL  F    I 
Sbjct: 250 QLIRERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIE 309

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
            LVATDVAARGLD+  L AV N+DL  + E +VHRIGRTGRAG+ G A S  S NE  ++
Sbjct: 310 ALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQL 369

Query: 356 AQIDE 360
           A I++
Sbjct: 370 ADIEK 374