Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., ATP-dependent RNA helicase DbpA (RefSeq) from Shewanella sp. ANA-3

 Score =  604 bits (1558), Expect = e-177
 Identities = 298/457 (65%), Positives = 369/457 (80%), Gaps = 1/457 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F+ L LKPELL NL TMG+  MTPIQAQSLPAIL G+DVIGQGKTGSGKTAAFGLG+L+
Sbjct: 23  AFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLLN 82

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
            L+VKRFR+Q LVLCPTRELADQVA +IRTL R IHN+KVLTLCGG+PMGPQIGSLEHGA
Sbjct: 83  KLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHGA 142

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
           HI+VGTPGRI+DHL ++R+DLS LN LVLDEADRMLEMGFQ  L+AII  +P ERQTLLF
Sbjct: 143 HIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLLF 202

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPT 244
           SAT+P  I+ IA+ +  + +M+KV  TH+ S+I Q+FY ++   AR +AL+ LLL  +P 
Sbjct: 203 SATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKPE 262

Query: 245 SSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAA 304
           S+VVFCNTKRE Q VAD L  +GFSVI LHGD+EQR+RD+ L+QFANKS  +LVATDVAA
Sbjct: 263 SAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVAA 322

Query: 305 RGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDI 364
           RGLD+D LDAVFNY ++ D EVH+HRIGRTGRAGSKG AF+FF D + Y++A ++EY++ 
Sbjct: 323 RGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLER 382

Query: 365 AIEPSTLPQ-PAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
            I+   LP     G  P A  M+T+QIDGGKK+K+RPGDILGALT +  +    +GKI +
Sbjct: 383 DIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKILV 442

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
              RAYVAV++K+A KAL+KI +G++KG+ +RA L+K
Sbjct: 443 TDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK 479