Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  254 bits (648), Expect = 7e-72
 Identities = 144/368 (39%), Positives = 220/368 (59%), Gaps = 7/368 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF++L L   +   +   G+ T +PIQAQ++PA+L G+DV+   +TG+GKTA F L +L 
Sbjct: 2   SFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61

Query: 65  NLN----VKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
            L+     K  +++ALVL PTRELA QV+  + T G+ +  ++   + GG+P+ PQI  L
Sbjct: 62  LLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLP-LRSAVVFGGVPINPQIQKL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
            HG  +LV TPGR+LD   +  +  ++L  LVLDEADRML+MGF   ++ I+A  PA+RQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALETLLL 239
            L+FSAT+   I ++A+ +    + I V   +  ++ ++Q+   V+ +  +   L  L+ 
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQ-KSALLIQLIK 239

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
                  +VF  TK     +A +L Q+  S   +HG+  Q  R +AL  F +  + +LVA
Sbjct: 240 QEDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQID 359
           TD+AARGLD+D L  V N+DL   PE +VHRIGRTGRAG+ G A S  S  E+  +  I+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIE 359

Query: 360 EYMDIAIE 367
             ++  +E
Sbjct: 360 RLINRVLE 367