Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 414 a.a., ABC-type antimicrobial peptide transport system, permease component from Pseudomonas fluorescens FW300-N2E2

 Score =  475 bits (1222), Expect = e-138
 Identities = 232/412 (56%), Positives = 318/412 (77%), Gaps = 3/412 (0%)

Query: 11  SLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSGQVNLLLY 70
           SL NR+ TA+LT   +A++V LLL VER+RT+A+ SFA+TISGTDLIVG RSG VNLLLY
Sbjct: 3   SLANRRFTAILTAFAIALSVCLLLAVERVRTEARASFASTISGTDLIVGARSGSVNLLLY 62

Query: 71  SVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEHYRYGSKQ 130
           SVFRIGNATNNI W S++ F+ +P VKWAIP+SLGDSH+G+RV+GT  +YFEHY+YG +Q
Sbjct: 63  SVFRIGNATNNIRWDSFEHFASNPKVKWAIPMSLGDSHRGYRVMGTTEAYFEHYQYGRQQ 122

Query: 131 PLTLSQGREF-NGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLPFTVVGIL 189
            L L+ GR F    FE V+GA+VA+AL Y++G ++++AHG++ +   +HD+ PFTVVGIL
Sbjct: 123 HLELADGRAFATDPFEVVLGAEVAEALHYKLGDKLVLAHGVAAISLVKHDDKPFTVVGIL 182

Query: 190 APTGTPVDKTVHVSLEAIEAIHVGWESG--ANLGHQPSAEQLAQRDFTPKQITAMLVGLK 247
             TGTPVD+T+H+SL  +EAIH+ W++G  A    + SA+Q    D TP+ ITA ++GL 
Sbjct: 183 KRTGTPVDRTLHISLGGMEAIHIDWKNGVPAQGNGRISADQARNMDLTPQAITAFMLGLN 242

Query: 248 SKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVAGLLGMLS 307
           +KI TFALQR+IN++  EPL AI+PGVAL ELW +M  AE+AL  +S+FVV+ GL+GML+
Sbjct: 243 NKISTFALQREINEFRGEPLLAILPGVALQELWSLMGTAEKALFVISLFVVLTGLIGMLT 302

Query: 308 SLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLLALAAPLI 367
           ++LTSL ERRREM+ILR++GARP H+  LLV EA  L L G++ G+++LY+ +A A   +
Sbjct: 303 AILTSLNERRREMAILRSVGARPWHIATLLVLEAFALALAGVIAGLALLYIGIAAAQGYV 362

Query: 368 ASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIRL 419
            S YG+ + L+  + YEW LL  + +A +++G +PA RAYRQSL+DG++IRL
Sbjct: 363 QSAYGLYLPLSWPSEYEWTLLAGILVAALLMGSVPAWRAYRQSLADGLSIRL 414