Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., macrolide transporter from Pseudomonas fluorescens FW300-N2C3

 Score = 58.2 bits (139), Expect = 7e-13
 Identities = 96/440 (21%), Positives = 175/440 (39%), Gaps = 97/440 (22%)

Query: 6   NLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESF--------ANTIS---GT 54
           N+AW +L++ +   LLT+L + I +  ++ +  I    K+          +NTI    G+
Sbjct: 264 NMAWVALVSHRMRTLLTMLGIIIGITSVVSIVAIGEGVKQYVLKDIQAIGSNTIEIMPGS 323

Query: 55  DLIVGGRSGQVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVL 114
           D      +    L+L  V  +G+         Y   S  P +   + +   +      V 
Sbjct: 324 DWGDSRSTAIETLVLSDVTALGD--------QYYIDSATPNLGRNLLLRYENIDVNATVN 375

Query: 115 GTNHSYFEHYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGISDVG 174
           G + SYF+       + + +  G  F+         D A+    +    ++I H  S   
Sbjct: 376 GVSASYFQ------VRGIKIGSGVAFS--------KDDAR----RQSQVVVIDHNTSHRL 417

Query: 175 FSRH----------DNLPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQP 224
           F  H          DNLP TV+G+     +  + + ++++         W     + ++ 
Sbjct: 418 FGSHTDPLGKVILVDNLPCTVIGVTEDRKSVFNTSKNLNI---------W-----MPYET 463

Query: 225 SAEQLAQRDFTPKQITAMLVGLKSK------IQTFALQRQINDYPQEPLSAIMPGVALHE 278
           +A +L  + F       +  G  SK      ++    +  I D+    L ++M  V    
Sbjct: 464 AAGRLLGQRFLDSITVRIKDGQPSKLVEDNVVKLLTQRHGIKDFFTYNLDSVMQTVQKTS 523

Query: 279 LWGMMSVAEQALMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLV 338
                S+A   L  +++  +V G +G+++ +L S+ ER RE+ I  A+GAR   +    +
Sbjct: 524 ----QSLA-LLLSLIAIISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARQSDIRQQFL 578

Query: 339 SEASVLTLVGILLGVSVLYLLLALAAPLIASQYGIQIALAGLTAYEWQL----------L 388
            EA ++ L+G  +G              IA  +GI    + +   EWQ+          +
Sbjct: 579 VEAVMVCLMGGTIG--------------IALSFGIGYVFS-IFVKEWQMVFSVGSIVTAV 623

Query: 389 GCVQLAGIVIGFIPALRAYR 408
            C  L GIV GF+PA  A R
Sbjct: 624 VCSTLIGIVFGFVPARNAAR 643