Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., ABC-type antimicrobial peptide transport system, permease component from Pseudomonas fluorescens FW300-N1B4

 Score =  486 bits (1250), Expect = e-142
 Identities = 240/419 (57%), Positives = 323/419 (77%), Gaps = 3/419 (0%)

Query: 4   ILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSG 63
           +  LA  SL NR+ TA+LT   +A++V LLL VER+RT+AK SFA+TISGTDLIVG RSG
Sbjct: 3   LFRLAMASLANRRFTAILTAFAIALSVCLLLAVERVRTEAKASFASTISGTDLIVGARSG 62

Query: 64  QVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEH 123
            VNLLLYSVFRIGNATNNI W S++ F+ +P VKWAIP+SLGDSH+G+RV+GT  +YFEH
Sbjct: 63  SVNLLLYSVFRIGNATNNIRWDSFEHFANNPKVKWAIPMSLGDSHRGYRVMGTTEAYFEH 122

Query: 124 YRYGSKQPLTLSQGREF-NGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLP 182
           Y+YG +Q L L+ GR F +  FE V+GA+VA AL Y++G ++++AHG++ +   +HD+ P
Sbjct: 123 YQYGHQQHLELADGRAFASDPFEVVLGAEVANALHYKLGDKLVLAHGVAVISLVKHDDKP 182

Query: 183 FTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESG--ANLGHQPSAEQLAQRDFTPKQIT 240
           FTVVGIL  TGTPVD+T+H+SL  +EAIHV W +G  A    + SA+Q    D TP+ IT
Sbjct: 183 FTVVGILKRTGTPVDRTLHISLGGMEAIHVDWHNGVPARGNGRISADQARNMDLTPQAIT 242

Query: 241 AMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVA 300
           A ++GL SKI TFALQR+IN++  EP+ AI+PGVAL ELW +MS AE+AL  VS+FVV+ 
Sbjct: 243 AFMLGLNSKISTFALQREINEFRGEPMLAILPGVALQELWSLMSTAEKALFVVSLFVVLT 302

Query: 301 GLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLL 360
           GL+GML+++LTSL ERRREM+ILR++GARP H+  LLV EA  L L G++ GV++LY+ +
Sbjct: 303 GLIGMLTAILTSLNERRREMAILRSVGARPWHIATLLVLEAFALALSGVIAGVALLYVCI 362

Query: 361 ALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIRL 419
           A+A   + + YG+ + LA  + YEW LLG + +A +++G +PA RAYRQSL+DG++IRL
Sbjct: 363 AVAQGYVQANYGLYLPLAWPSEYEWTLLGGILIAALLMGSVPAWRAYRQSLADGLSIRL 421