Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 386 a.a., ABC-type antimicrobial peptide transport system, permease component from Xanthomonas campestris pv. campestris strain 8004

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 95/422 (22%), Positives = 174/422 (41%), Gaps = 47/422 (11%)

Query: 5   LNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSGQ 64
           L+L W  L   K   LLT+L+V  A +L   ++ +R          +SG D +V   + +
Sbjct: 4   LSLVWAQLFRSKTRTLLTLLSVVAAFLLFGMLDSVRVAFTSG--GNVSGVDRLVV--ASR 59

Query: 65  VNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEHY 124
           +++      R+ N       +S        +  W   I   D    F       ++F+ Y
Sbjct: 60  LSITQSLPIRLENQI-----RSVPGVRDVTSAMWFGGI-YQDPKNFFPNFSVAPNFFDVY 113

Query: 125 RYGSKQPLTLSQGREFNGLFE-TVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLPF 183
              S+  L   Q + F       V+G  +A+  G+++G  I +   I     S  ++ P 
Sbjct: 114 ---SEYQLPKDQLKAFQTTRTGAVVGESLAKQFGWKIGDTIPLQATIFPRSGS--NDWPL 168

Query: 184 TVVGILAPTGTPVDKTVHVSLEAIEAIHVGW----ESGANLGHQPSAEQLAQRDFTPKQI 239
            +VGI        D+TV  + E    + + W    ES   + +Q S   +  R       
Sbjct: 169 QLVGIFRMK----DRTVAANQE--RQLMMNWKYFDESNDYIKNQVSWYTVTLRSADQASR 222

Query: 240 TAMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVV 299
            A+ +   S       + Q     Q+                +   A+  L+  S+   V
Sbjct: 223 VALAIDALSANSDHETKSQTESAFQQAF--------------LKQFADIGLIVTSIMAAV 268

Query: 300 AGLLGMLS--SLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLY 357
              L +L+  ++  +++ER  E++ L+ +G + + V  L++ E+ +L  +G L+G+    
Sbjct: 269 FFTLLLLTGNTMAQAVRERIPELATLKTLGFQDRTVLTLVMVESVLLIGLGGLIGMG--- 325

Query: 358 LLLALAAPLIASQYGIQIALAGLTAYEWQL-LGCVQLAGIVIGFIPALRAYRQSLSDGMT 416
            L AL  P++A++ G  +    +    W + LG +   GIV+G +PALRA R  + D + 
Sbjct: 326 -LSALVIPMVATRSGGLMPTQTVPLQTWLVGLGLMAGIGIVVGVLPALRAQRLKIVDALA 384

Query: 417 IR 418
            R
Sbjct: 385 GR 386