Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., ABC-type antimicrobial peptide transport system, permease component from Dechlorosoma suillum PS

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 97/432 (22%), Positives = 173/432 (40%), Gaps = 80/432 (18%)

Query: 7   LAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTIS--GTDLIVGGRSGQ 64
           LA + +      + LTVL + I V  ++ +  +   A    A  IS  G++L++  R GQ
Sbjct: 8   LALREIRRNLMRSFLTVLGIVIGVAAVITMVTLGNGATRMVAEQISSLGSNLLIL-RPGQ 66

Query: 65  VNLLLYSVFRIGNATNNIDWKSYQE------FSQHPAVKWAIPIS-------LGDSHKGF 111
                    R+G   ++    +++        +Q P++K   P+         G  +   
Sbjct: 67  ---------RLGPGRDSAGAPNFRAADVEALLTQVPSLKAVAPVVSSTVTLVAGAENWSS 117

Query: 112 RVLGTNHSYFEHYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGIS 171
            V G+ ++YF    +       L+ GR+F+   E +        +G  V  ++    G S
Sbjct: 118 SVTGSTNAYFVAGNW------KLAAGRQFSD--EEMRAGKAVCVIGNTVKQKLFA--GQS 167

Query: 172 DVGFS-RHDNLPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLA 230
            +G + R  N    +VGILA  G        + ++  + + +   +             A
Sbjct: 168 PLGNAVRVKNFSCEIVGILASKGQGA-----MGMDQDDVVLMPLVT-------------A 209

Query: 231 QRDFTPK--QITAMLVGLKSKIQTFALQRQINDYPQEPLSA---------IMPGVALHE- 278
           QR  T K   ++ +++ LK    +  +  QI    +E             +M    + E 
Sbjct: 210 QRRLTGKTQDVSTLMLSLKDGASSPRVMEQIRQLMRERRKLAENDDDNFNLMDTKQIAEA 269

Query: 279 LWGMMSVAEQALMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLV 338
           L G +      L AV+   ++ G +G+++ +L S+ ER RE+ I  A+GA    V    +
Sbjct: 270 LSGTIGTMTTLLGAVAAVSLLVGGIGIMNIMLVSVTERTREIGIRLAIGALENEVLLQFL 329

Query: 339 SEASVLT----LVGILLGVSVLYLLLALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLA 394
            EA  L+    LVGI+L +     L AL         GI +   G +A            
Sbjct: 330 IEAVALSAFGGLVGIILALLACLGLSALMGMPFLFNPGINLLAFGFSA----------AI 379

Query: 395 GIVIGFIPALRA 406
           G++ G++PA RA
Sbjct: 380 GVIFGYVPARRA 391