Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 85/422 (20%), Positives = 176/422 (41%), Gaps = 63/422 (14%)

Query: 2   KVILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTIS--GTDLIVG 59
           K +++ A +++  +K  +LLT++ + I ++ ++ +  +    +      IS  G  +I  
Sbjct: 4   KDVVSFAGRNITQKKTQSLLTIIGIVIGILAIVSLISLGYGVQNYITEEISKAGASVITV 63

Query: 60  GRSGQVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWA----IPISLGDSHKGFRVLG 115
             S Q+  +  S        N+ D K+ ++      V +       ++  D      V  
Sbjct: 64  YPSQQITSIAMS-----KNFNDRDLKAVEDVRGVDVVLYGWFGGTQVTYHDQEYYSSVFA 118

Query: 116 TNHSYFEHYRYGSKQPLTLSQGR--EFNGLFETVIGADVAQAL---GYQVGSQIIIAHGI 170
           T  S ++ + +       L +GR  + +  +  VIG  +A         +G +I I    
Sbjct: 119 TKSSTYQIF-FTEAYGYELEKGRWMKDSDKYTCVIGYSLAHDTFDREIDIGDKIEI---- 173

Query: 171 SDVGFSRHDNLPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLA 230
                   ++  + VVGIL   G P D                 ++   + ++ ++E   
Sbjct: 174 --------NDKKYKVVGILEQIGNPDD-----------------DNSIVIPYEAASEVFD 208

Query: 231 QRDFTPKQITAMLVGLKSKIQTFALQRQINDYPQ-----EPLSAIMPGVALHELWGMMSV 285
             D    +    +V +K       +   I D  +     E  S +        +  + SV
Sbjct: 209 VDD----EYNMFMVKIKDGEDVTKVSEDIEDELEDSRGDENFSVLTAEQLAESISSIFSV 264

Query: 286 AEQALMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLT 345
               L+ V+   ++ G +G+ +++  S+ ERR+++ IL+A+GA    + ++ V EA  L 
Sbjct: 265 LTIFLVGVAGISLLVGAVGISNTMHMSILERRKDIGILKALGAENNTILSIFVVEAGFLG 324

Query: 346 LVGILLGVSVLYLLLALAAPLIASQYGIQIALAGLTAYEWQLLGCVQ----LAGIVIGFI 401
           L G ++G ++L +L+A A   +A+  G  +  A ++   W+L+  V     + GI+ G+ 
Sbjct: 325 LFGGIVG-TILGILIAKAIEYVAAISGYGLIRAWIS---WELIVGVLVFSFVVGILSGYF 380

Query: 402 PA 403
           PA
Sbjct: 381 PA 382