Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 57.8 bits (138), Expect = 6e-13
 Identities = 50/241 (20%), Positives = 110/241 (45%), Gaps = 23/241 (9%)

Query: 180 NLPFTVVGIL--------APTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSA--EQL 229
           N  F VVGIL           G     TV++  EA+  + +  ++  ++  +     +++
Sbjct: 172 NKQFKVVGILEEDETQGFGQMGGMSSNTVYMPYEAVYTLELDDDASYSISEKEEGVYDEI 231

Query: 230 AQRDFTPKQITAMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQA 289
               +     T  L  ++ K+    + R +N+   +    I           ++S+    
Sbjct: 232 IFTLYEDVNQTTALENIQKKLM---MSRHVNEDNMD--FTIRSPTVFEGPEQIISMLTTF 286

Query: 290 LMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLV-- 347
           L  ++   ++ G+ G+ +++ T++ E+ RE+ I++A+GA+ + +  L V  ++++ LV  
Sbjct: 287 LSFIAGISLIVGVTGISNTMFTTVLEKTREIGIMKAIGAKNKDIMLLFVFNSAIIGLVGG 346

Query: 348 --GILLGVSVLYLLLALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALR 405
             G++LG  +  +++   A  + S Y   +++  +       +GC   AGI+ G IPA  
Sbjct: 347 FLGLVLGTILSQIIVWFIAQSMDSSYQFVLSIKSVVI----AIGCSLAAGIIAGIIPAYN 402

Query: 406 A 406
           A
Sbjct: 403 A 403