Pairwise Alignments

Query, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., Outer membrane protein from Pseudomonas stutzeri RCH2

 Score =  320 bits (820), Expect = 1e-91
 Identities = 202/576 (35%), Positives = 298/576 (51%), Gaps = 20/576 (3%)

Query: 18  PALISLWLFSAVSY--ADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSM 75
           P + ++ + S +S   A++ + I   S A ++N+E Y+  +  +D +  LR+    +R  
Sbjct: 38  PLVAAVLMLSGISAGAAELDVRIEPQSRALRENIENYIGDLGDRDANELLRYSRVAQRQA 97

Query: 76  TEALNALGYYHPSIDFTVSE-DNQRLRAAVTLGEVTRLSEVDIVIRGEA---EGDRDFQR 131
            +AL ALGYY   I   V E D   L   V  GE  RL  + + + G A    G R  QR
Sbjct: 98  EKALQALGYYRSRIRTDVREGDEPTLVLRVQTGEPVRLRNITVRLDGPAAEFSGFRVAQR 157

Query: 132 LIRRSGLRVDAPLNHSLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPELNQARVILHFD 191
            +R+  +     LNH  Y+++K    N A + GYF+G F   RL V P  N A V L FD
Sbjct: 158 TLRQGDV-----LNHGRYEDVKQQFLNQASRYGYFDGRFTRQRLAVDPRENTADVELVFD 212

Query: 192 SGIRYLFGATTVEG-SQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNTDWFSSVFVEP 250
           SG RY  G    EG +  D++ +  + PF    PY    + E +Q L ++ +F  V V+ 
Sbjct: 213 SGPRYRLGDVRFEGDAPFDDDLLRRMVPFDADTPYDSELIAELSQALQSSGYFEGVRVDA 272

Query: 251 DLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFS 310
           + +   E R +P+ V L  +       GLGYSTDVG R  L W + WVN QGHS+ +   
Sbjct: 273 NPTSASEQR-IPVAVALTTRKPRTFGLGLGYSTDVGPRVRLNWTRHWVNPQGHSYGAETE 331

Query: 311 LSIPEQTITAGYKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHW--QLDGGWH 368
           LS P Q +   Y IPL+  L +  R   G ++ +   T++L   L +   W  +L  GW 
Sbjct: 332 LSAPRQNVGLWYDIPLDPPLTDKLRFVGGYQYEEIAGTDTLSRLLKVGPEWHSRLPSGWL 391

Query: 369 RTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRTRTRSNSGLLTWGDKQTITLEYGDPALL 428
           R V +++  E Y+ G     S  L+PG+ Y+  R+ +       G +    +      +L
Sbjct: 392 RVVSLKWQHEEYKLGDDSGISTLLMPGIAYSYLRSDNRIDPSN-GYRLQFEVAAAKSGVL 450

Query: 429 SETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGY 488
           S+  ++        L T  + HR L RV  G N  DE+  + PSLR+FAGGD ++RGY Y
Sbjct: 451 SDADLVHANVLLRGLTTLGQRHRFLGRVQLGGNWTDEYVNVPPSLRYFAGGDQSVRGYDY 510

Query: 489 KSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFN--DNPEWKKGVGTG 546
           +S+SP ++ G   G +Y    S EYQY +   W  A F+D G+AFN  + P  K  VG G
Sbjct: 511 QSLSPTNSDGDKIGGRYQFAVSAEYQYSIAEKWRVATFVDQGNAFNSLEIPTLKSAVGVG 570

Query: 547 IRWISPVGPIRLDFAWGLDAAPGDEFKIHFTLGPEL 582
           +RW+SPVGPIR+D A  LD+  G   ++HF++GPEL
Sbjct: 571 VRWVSPVGPIRVDLAHPLDSEGG--VRLHFSMGPEL 604