Pairwise Alignments

Query, 582 a.a., outer membrane protein assembly factor from Vibrio cholerae E7946 ATCC 55056

Subject, 594 a.a., outer membrane protein from Caulobacter crescentus NA1000

 Score = 95.1 bits (235), Expect = 7e-24
 Identities = 147/611 (24%), Positives = 247/611 (40%), Gaps = 69/611 (11%)

Query: 14  RKSLPALISLWLFSAVSYADVKL-EITGISG-AEKDNVEAYLSSIAAQDYSTS--LRFQS 69
           R +L      WL ++ ++AD  + +I G+   A +D ++  LS       S S   R   
Sbjct: 5   RTTLALAAVTWLSASAAWADEPMAQIQGVEDRALRDAIQRALSDSKQPPRSRSEARRRAR 64

Query: 70  QLERSMTEALNALGYYHPSIDFTVSE-DNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRD 128
           Q        L A GYY  +++  V+E D  R    +T G    L++  I   G    +  
Sbjct: 65  QAGEDAIAVLRAEGYYAYTVEPDVTEGDPPRAIVRITPGPAFLLADPHIDWSGSPPDEGV 124

Query: 129 FQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPELNQARVIL 188
            QR +    L    P   +     +  I     + GY   D  A   EV+ +        
Sbjct: 125 RQRAVAAMRLTEGEPGRSADVVGAEGRIVAQVAKLGY--ADVAAEPREVVVD-------- 174

Query: 189 HFDSGIRYLF-----------GATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNL 237
           H D  +R  F           G   V   + +   V  L P+  G+ Y    V E  + L
Sbjct: 175 HADRTVRPTFRIMAGELVRLNGVDVVTKGRTNPEWVGRLAPWVAGDVYDPEDVAELERRL 234

Query: 238 SNTDWFSSVFVEPDLSQLDEGRE---LPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWK 294
            +T  + S+ V   L+  D+       P+ VTL+ +    +E G GYST  G     +W 
Sbjct: 235 RDTAVYDSISVS--LAGTDKASAEGYRPVVVTLSDRRARTIELGAGYSTSEGAGVDARWI 292

Query: 295 KPWVNSQGHSFDSSFSLSIPEQTITAGYKIPLEDALNEYYRIQYGMK---HLDKRDTESL 351
           +   N Q  +  ++++L   +     G +I    +L  + R Q  +K    + + DT++ 
Sbjct: 293 R--YNRQKRADTTTYALRFAKLEQRLGAEI----SLPHWRRPQQTLKLNSSVFRNDTDAY 346

Query: 352 ESN-----LSLERHWQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRTRTRSN 406
                   + L R  Q     +RT  + + L   ++ +   N   L+ G       T + 
Sbjct: 347 NETGATVGVDLTRRRQTTA--YRTFGVSFDLSQTKEQV---NRNGLIAGRKLNLA-TLAG 400

Query: 407 SGLLTWGDKQTIT-------LEY-GDPALLS-ETRVLRLQT---GSSWLRTYARNHRALV 454
                W     I        LE   +P  ++ +T V  L+    GS++L    ++   L 
Sbjct: 401 LAAYAWDFSDDILDPKRGWRLETRAEPTYVAGDTSVPYLKLAGQGSAYLPFGKQDSTVLA 460

Query: 455 -RVDGGANLVDEFDQLSPSLRFFAGGDNNLRGYGYKSISPQDASGALTGAKYIATSSIEY 513
            RV  GA L      +  S RFF+GG  ++RGY Y++I P+ +     G   +  +S E 
Sbjct: 461 ARVKLGAILGAGLLDVPASRRFFSGGGGSVRGYAYQAIGPRLSDNTPQGGISLVETSFEV 520

Query: 514 QYRLTGNWWAAMFMDVGD-AFNDNP---EWKKGVGTGIRWISPVGPIRLDFAWGLDAAPG 569
           + ++T  W    F+D G    ++ P   +++ G G G+R+    GPIR D A  L    G
Sbjct: 521 RQKITDRWSGVAFVDAGAIGTHETPQREDFRAGAGLGVRYDLGFGPIRADIAAPLGRRKG 580

Query: 570 D-EFKIHFTLG 579
           D +F+I+ ++G
Sbjct: 581 DPKFQIYLSIG 591