Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., UDP-N-acetylmuramate--L-alanine ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  152 bits (385), Expect = 2e-41
 Identities = 129/462 (27%), Positives = 212/462 (45%), Gaps = 29/462 (6%)

Query: 3   IHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEAQGIEIIEGFDPVQLEPKP 62
           IH +GI G  MGG+A +    G++V+GSD      ++  L + G  I  G     +    
Sbjct: 23  IHFVGIGGAGMGGIAEVLVNEGYQVSGSDI-ADNAVTERLGSLGARIFIGHGADNVSGV- 80

Query: 63  DLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIA 122
           D+VV+  A+   NP +       +      + L + L+  R  +AV+GTHGKTTT+S+IA
Sbjct: 81  DVVVVSTAIKHDNPEIAAAKEKRIPIVRRAEMLAE-LMRYRHGVAVAGTHGKTTTTSLIA 139

Query: 123 WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRTLV 182
            +       P F++GG+L + G +ARLG S + + EADE D++       F+H  P   V
Sbjct: 140 SIYGQAERDPTFVIGGLLNSAGTNARLGSSRYLIAEADESDAS-------FLHLQPMVTV 192

Query: 183 MNNLEFDHADIF-DNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR-GCWSETEF 240
           + N+E DH D +  + E +K  F   +  +P  G  +    D  + +++ R G    T  
Sbjct: 193 VTNIEADHMDTYGGDFEKLKSTFVDFMHNLPFYGVAVVCVDDPVVRELIPRIGRQVVTYG 252

Query: 241 SGEQGEWQAEKITADG--SQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAP 298
             +  + QA     +G   +F V  KG+    +  +L G HNV N+L AIA A    +  
Sbjct: 253 FSDDADVQALNFVQEGHSCRFTVRRKGKDDLSLKVNLPGQHNVLNSLAAIAVATEDDIED 312

Query: 299 ELACEALGLFVNTKRRLELKGEI---NG-VTVYDDFAHHPTAIELTLGGLRNKVGDKKII 354
           E   +AL  F    RR +  G+    NG V + DD+ HHP+ +  T+   R    DK+++
Sbjct: 313 EAIVKALAEFQGIGRRFQHLGKFATPNGEVMLVDDYGHHPSEVLATIKAARAGWPDKRLV 372

Query: 355 AVLEPRSATMKLGVHKETLAASLHSAD-----SVYLYQPSNIPWS-VEEVAKQCQQPAQV 408
              +P   T    ++ E     L   D      VY    + IP +    + +  +Q  Q+
Sbjct: 373 MAYQPHRYTRTRDLY-EDFVEVLSQVDKLVLLEVYAAGETPIPGADGRALCRSIRQRGQL 431

Query: 409 S----ANMDEFVAMIAKEAQAGDQILVMSNGGFEGIHGKLLA 446
                A+ ++  +++      GD +L    G    +  +L A
Sbjct: 432 EPIFVASPEQLTSVLPDVLADGDLLLCQGAGNIGALSRELAA 473