Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score = 55.8 bits (133), Expect = 3e-12
 Identities = 57/260 (21%), Positives = 115/260 (44%), Gaps = 16/260 (6%)

Query: 106 IAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARL----GESMFFVVEADE 161
           +A++G++GKT+   M+A +L    +Q  +  G      G+   L     +  + V E   
Sbjct: 103 VALTGSNGKTSVKEMVATILS-TQHQVLYTAGNFNNEVGVPLTLLRLEPQHEYGVFELGA 161

Query: 162 YDSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPK 221
                 +  S  V   P   ++NN+   H + F +LE + +    +   +  +G +    
Sbjct: 162 NHLGEINYTSSLV--QPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDG-VAVIN 218

Query: 222 QDEALADVLQRGCWSETEFS----GEQGEWQAEKITADG---SQFHVLLKGERVGQVNWS 274
            D+A ADV++R   S T+ S    G   +  A++++AD     +F +    E+   V+  
Sbjct: 219 ADDAFADVMRRAAASHTQLSFSSQGNPADVSADELSADALGCYRFRIAYLDEQ-RTVSLP 277

Query: 275 LVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHHP 334
           L G H VSNAL A +    +G++ +   + L      K R++       + + D +  +P
Sbjct: 278 LSGRHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKGRMQPTRLGRFLLIDDTYNANP 337

Query: 335 TAIELTLGGLRNKVGDKKII 354
            ++   +  L+   G++ ++
Sbjct: 338 ASVGAAIDWLQEIEGNRCLV 357