Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., UDP-N-acetylmuramate--alanine ligase (RefSeq) from Shewanella loihica PV-4

 Score =  162 bits (409), Expect = 3e-44
 Identities = 117/365 (32%), Positives = 181/365 (49%), Gaps = 18/365 (4%)

Query: 3   IHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEAQGIEIIEGFDPVQLEPKP 62
           IH +GI G  MGG+A +    G++++GSD      ++  L+  G  I  G    Q+E   
Sbjct: 24  IHFVGIGGAGMGGIAEVLVNEGYRLSGSDI-AENAVTARLKRLGAAIFIGHSADQVEGA- 81

Query: 63  DLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSMIA 122
           D+VV+  A+   NP +       +      + L + L+  R  +AV+GTHGKTTT+S+IA
Sbjct: 82  DVVVVSTAIDASNPEILAAQERRIPIVRRAEMLAE-LMRYRHGVAVAGTHGKTTTTSLIA 140

Query: 123 WVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRTLV 182
            V       P F++GG+L + G +ARLG+S + + EADE D++       F+H  P   V
Sbjct: 141 SVYGQAERDPTFVIGGLLNSAGTNARLGKSRYLIAEADESDAS-------FLHLQPMVSV 193

Query: 183 MNNLEFDHADIFD-NLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQR-GCWSETEF 240
           + N+E DH D ++ + E +K  F   +  +P  G  +A   D  + ++L R G    T  
Sbjct: 194 VTNIEADHMDTYEGDFEKLKSTFVDFLHNLPFYGVAVACIDDPVVREILPRIGRKVVTYG 253

Query: 241 SGEQGEWQAEKITADG--SQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGVAP 298
             E  + QA      G  S+F V  +G     +  +L G HNV NAL AIA A    +  
Sbjct: 254 FSEDADVQALNFEQQGYSSRFTVRREGMADLDLRVNLPGRHNVLNALAAIAVATEDEIED 313

Query: 299 ELACEALGLFVNTKRRLELKGEI----NGVTVYDDFAHHPTAIELTLGGLRNKVGDKKII 354
           E    AL  F    RR +  GE       V + DD+ HHP+ +  T+   R+   DK+++
Sbjct: 314 EAIIRALDEFQGIGRRFQQLGEFTTTAGEVMLVDDYGHHPSEVAATIKAARSGWPDKRLV 373

Query: 355 AVLEP 359
            + +P
Sbjct: 374 MIYQP 378