Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., UDP-N-acetylmuramate (RefSeq) from Shewanella loihica PV-4

 Score =  599 bits (1544), Expect = e-176
 Identities = 294/458 (64%), Positives = 351/458 (76%), Gaps = 9/458 (1%)

Query: 1   MHIHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEAQGIEIIEGFDPVQL-- 58
           MH+HILGICGTFMGG+A+LAR  GHKVTGSDANVYPPMST LE QGIE+I+GFDP QL  
Sbjct: 20  MHVHILGICGTFMGGLALLARANGHKVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGQ 79

Query: 59  --EPKPDLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTT 116
             +  PDLVVIGNAMSRGNPCVE VLN  L+YTSGPQ+L + +L +RWV+AVSGTHGKT+
Sbjct: 80  NEDDAPDLVVIGNAMSRGNPCVEAVLNRGLKYTSGPQFLAEHILTNRWVLAVSGTHGKTS 139

Query: 117 TSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHY 176
           TSSM+AW+LE CGY PGFL+GGV  NFG+SARLG+S FFVVEADEYDSAFFDKRSKFVHY
Sbjct: 140 TSSMLAWILEDCGYAPGFLIGGVPQNFGVSARLGDSPFFVVEADEYDSAFFDKRSKFVHY 199

Query: 177 HPRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQRGCWS 236
            PRTLV+NNLEFDHADIFD+L+AI+RQF+H++RTVPG G+++ P   +A+ +V+  GCWS
Sbjct: 200 QPRTLVINNLEFDHADIFDDLKAIQRQFNHVIRTVPGQGKVIWPSASDAVREVIDMGCWS 259

Query: 237 ETE----FSGEQGEWQAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAAR 292
           E E     +G  G W +E ++ DG  F +   GE  G ++WSL+G HNV NA MAIAAAR
Sbjct: 260 EQETYNLMAGSPG-WYSELLSEDGHSFELFFDGESQGVLDWSLIGQHNVENATMAIAAAR 318

Query: 293 HVGVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHHPTAIELTLGGLRNKVGDKK 352
           HVGV P  A EAL  F   KRR+EL G +N + VYDDFAHHPTAI  TL G R KVG+ +
Sbjct: 319 HVGVKPAAAIEALTRFAPPKRRMELIGTVNDIAVYDDFAHHPTAIATTLQGCRAKVGEGR 378

Query: 353 IIAVLEPRSATMKLGVHKETLAASLHSADSVYLYQPSNIPWSVEEVAKQCQQPAQVSANM 412
           II VLEPRS TMK GVHK+TLA S+  AD+ YLYQ  NI W VE    + + P  V   +
Sbjct: 379 IIVVLEPRSNTMKRGVHKDTLAGSMALADAAYLYQADNIDWDVEAAMAKAELPVTVLYQI 438

Query: 413 DEFVAMIAKEAQAGDQILVMSNGGFEGIHGKLLAALQQ 450
           DE    +   A+ GD I+VMSNGGF G+HGKLLA L++
Sbjct: 439 DELADSVTAAARPGDTIIVMSNGGFGGLHGKLLAKLEE 476