Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 5e-13
 Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 26/256 (10%)

Query: 105 VIAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDS 164
           VI ++G++GKTT ++++  +L   G      VGG +G   +      +  FV+E     S
Sbjct: 111 VIGITGSNGKTTVTTLVGEMLREAGI--AVAVGGNIGIPALDLLKENADIFVLEL----S 164

Query: 165 AFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKR---QFHHLVRTVPGNGRILAPK 221
           +F  + +  ++    T +  N+  DH D + +++A ++   + +H  R++  N       
Sbjct: 165 SFQLETTHSLNCVASTCL--NVTEDHMDRYSDMDAYRKAKLRLYHQSRSIIFN------- 215

Query: 222 QDEALADVLQRGCWSETEFSGEQG-EWQAEKITADGSQFHVLLKGERVGQVNWSLVGDHN 280
           +D+AL    +    +    +  +G EW       D   +H   +   + +V  SL+G HN
Sbjct: 216 RDDALTIPTEPMNQNSFGLAPPEGDEWGI----CDSKIYHGHSEIMPITEV--SLIGSHN 269

Query: 281 VSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVT-VYDDFAHHPTAIEL 339
            +N L A+A    VGV  ++       F     R E+ G   GVT V D  A +  A   
Sbjct: 270 HANLLAAMALVYAVGVDKQVMANVARTFTGLSHRCEVVGVKGGVTYVNDSKATNVGATVA 329

Query: 340 TLGGLRNKVGDKKIIA 355
            L GL + +GD  +IA
Sbjct: 330 ALDGLSDHLGDIILIA 345