Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., UDP-N-acetylmuramate--alanine ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (391), Expect = 4e-42
 Identities = 130/465 (27%), Positives = 211/465 (45%), Gaps = 33/465 (7%)

Query: 3   IHILGICGTFMGGVAMLARQLGHKVTGSDA--NVYPPMSTMLEAQGIEIIEGFDPVQLEP 60
           IH +GI G  MGG+A +    G+ V+GSD   N       +L A+ I I  G D VQ   
Sbjct: 23  IHFVGIGGAGMGGIAEVLVNEGYVVSGSDIAQNAVTDRLCLLGAK-IHIGHGADNVQ--- 78

Query: 61  KPDLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTTSSM 120
           + D+VV+  A++  NP +       +      + L + L+  R  +A++GTHGKTTT+S+
Sbjct: 79  QADVVVVSTAINPQNPEIIAAKELRIPIVRRAEMLAE-LMRYRHGVAIAGTHGKTTTTSL 137

Query: 121 IAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYHPRT 180
           IA +    G  P F++GG+L + G +ARLG S + + EADE D++       F+H  P  
Sbjct: 138 IASLYGQAGRDPTFVIGGLLNSAGTNARLGTSRYLIAEADESDAS-------FLHLQPMV 190

Query: 181 LVMNNLEFDHADIF-DNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQRGCWSETE 239
            V+ N+E DH D +  + E +K  F   +  +P  G  +    D  + +++ R       
Sbjct: 191 SVVTNIEADHMDTYGGDFEKLKSTFVDFLHNLPFYGVAVVCIDDPVVREIMPRISRHIVT 250

Query: 240 FS-GEQGEWQAEKITADGSQ--FHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHVGV 296
           +   +  + QA   +  G Q  F V  KG+    +  +L G HNV NAL AIA A    +
Sbjct: 251 YGFRDDADVQALNFSQQGHQCRFTVRRKGKEDLDLLLNLPGQHNVLNALAAIAVATEDEI 310

Query: 297 APELACEALGLFVNTKRRLELKGEI----NGVTVYDDFAHHPTAIELTLGGLRNKVGDKK 352
                 +AL  F    RR +  G+       V + DD+ HHP+ +  T+   R    +K+
Sbjct: 311 DDSAIIQALAEFQGIGRRFQHLGKFATPKGEVMLVDDYGHHPSEVAATIKAARAGWPEKR 370

Query: 353 IIAVLEPRSATMKLGVHKETLAASLHSADSVYL---YQPSNIPWSVEEVAKQC------- 402
           ++   +P   T    ++++ +   L   D + L   Y     P    +    C       
Sbjct: 371 LVMAYQPHRYTRTRDLYEDFIEV-LSQVDCLLLLDVYSAGEAPIPGADGRALCRSIRLRG 429

Query: 403 QQPAQVSANMDEFVAMIAKEAQAGDQILVMSNGGFEGIHGKLLAA 447
           Q      A+ ++   ++    Q GD +L    G    +  KL A+
Sbjct: 430 QLDPIFIASPEQLAEVLPDVLQEGDLLLTQGAGNIGALSRKLAAS 474