Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  588 bits (1516), Expect = e-172
 Identities = 291/454 (64%), Positives = 348/454 (76%), Gaps = 6/454 (1%)

Query: 1   MHIHILGICGTFMGGVAMLARQLGHKVTGSDANVYPPMSTMLEAQGIEIIEGFDPVQLEP 60
           MH+HILGICGTFMGG+A+LAR  GH+VTGSDANVYPPMST LE QGIE+I+GFDP QL  
Sbjct: 1   MHVHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGD 60

Query: 61  K---PDLVVIGNAMSRGNPCVEYVLNHNLRYTSGPQWLQDFLLHDRWVIAVSGTHGKTTT 117
               PD+VVIGNAMSRGNPCVE VLN  + YTSGPQ+L D +L +RWV+AVSGTHGKT+T
Sbjct: 61  AGSYPDIVVIGNAMSRGNPCVEAVLNLGIPYTSGPQFLVDHILPERWVLAVSGTHGKTST 120

Query: 118 SSMIAWVLEHCGYQPGFLVGGVLGNFGISARLGESMFFVVEADEYDSAFFDKRSKFVHYH 177
           SSM+AW+LE CGYQPGFL+GGV  NFG+SARLGES FFVVEADEYDSAFFDKRSKFVHYH
Sbjct: 121 SSMLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEADEYDSAFFDKRSKFVHYH 180

Query: 178 PRTLVMNNLEFDHADIFDNLEAIKRQFHHLVRTVPGNGRILAPKQDEALADVLQRGCWSE 237
           PRTLV+NNLEFDHADIF +L AI++QFHH +RTVPG G+++ P    A+   +  GCWSE
Sbjct: 181 PRTLVINNLEFDHADIFADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQTIDMGCWSE 240

Query: 238 TE--FSGEQGE-WQAEKITADGSQFHVLLKGERVGQVNWSLVGDHNVSNALMAIAAARHV 294
            E   S E  + W A+ ++ D  +F V   G+  G ++W+L+G HN+ NA+MAIAAARHV
Sbjct: 241 QETYHSSEVTKGWHAKALSDDCHEFEVFFDGQSQGVLDWALIGQHNIENAVMAIAAARHV 300

Query: 295 GVAPELACEALGLFVNTKRRLELKGEINGVTVYDDFAHHPTAIELTLGGLRNKVGDKKII 354
           GVAP  A +AL  FV  KRRLEL   +NGV+VYDDFAHHPTAI  T+ G+R KVG  KI 
Sbjct: 301 GVAPSAAIDALARFVPPKRRLELLDTVNGVSVYDDFAHHPTAIATTIKGMRAKVGQTKIT 360

Query: 355 AVLEPRSATMKLGVHKETLAASLHSADSVYLYQPSNIPWSVEEVAKQCQQPAQVSANMDE 414
            VLEPRS TMK GVHK+TLA S+  AD  +LYQ   I W+++E  +    P  V   +D+
Sbjct: 361 IVLEPRSNTMKSGVHKDTLAHSMLQADEAFLYQADTIDWNMKEAMEAAVIPVTVLHQIDD 420

Query: 415 FVAMIAKEAQAGDQILVMSNGGFEGIHGKLLAAL 448
            VA +A  A+ GD I+VMSNGGF G+H KLLAAL
Sbjct: 421 VVAKVAASAKPGDTIVVMSNGGFGGLHKKLLAAL 454