Pairwise Alignments

Query, 451 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase (RefSeq) from Shewanella sp. ANA-3

 Score = 53.5 bits (127), Expect = 1e-11
 Identities = 60/259 (23%), Positives = 110/259 (42%), Gaps = 28/259 (10%)

Query: 106 IAVSGTHGKTTTSSMIAWVLEHCGYQPGFLVGGVLGNFGISARL----GESMFFVVEADE 161
           +A++G++GKT+   MIA +L    +Q  +  G      G+   L     E  + V E   
Sbjct: 103 VALTGSNGKTSVKEMIATILS-AKHQVLYTAGNFNNEIGVPLTLLRLTSEDKYGVFELGA 161

Query: 162 YDSAFFDKRSKFVHYHPRTLVMNNLEFDHADIFDNLEAIKRQ----FHHLVRTVPGNGRI 217
                 D  S  V   P   ++NN+   H + F +   + +     ++HL    PG   I
Sbjct: 162 NHKGEIDYTSSLVR--PHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQ---PGGTAI 216

Query: 218 LAPKQDEALADVLQRGC--WSETEFSGEQGEWQAE--------KITADGSQFHVLLKGER 267
           +    D+A ADV++     + +  FS ++G  + +        K  ++G    +L     
Sbjct: 217 I--NADDAFADVMRVKAKQYKQLSFSQQEGAAKRQIDVIATGHKANSEGCYRFILNYAGE 274

Query: 268 VGQVNWSLVGDHNVSNALMAIAAARHVGVAPELACEALGLFVNTKRRLELKGEINGVTVY 327
             +V   L G H VSNAL A +    +G++ +   E L      K R++   ++  V + 
Sbjct: 275 SCEVTLPLAGRHQVSNALAAASVCIALGLSLKEIAEGLSQLTPVKGRMQ-PTQLGRVRLI 333

Query: 328 DD-FAHHPTAIELTLGGLR 345
           DD +  +P ++   +  L+
Sbjct: 334 DDSYNANPVSVGAAIAWLK 352