Pairwise Alignments

Query, 330 a.a., thiamine ABC transporter substrate binding subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 347 a.a., extracellular solute-binding protein, family 1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 75/300 (25%), Positives = 121/300 (40%), Gaps = 29/300 (9%)

Query: 5   LTAVALATLCVASAASAAPTLTVYTY-DSFAAEWGPAPAIEKAFEAQCGCDLQFVALDDG 63
           L ++   +  +A  A A   + +Y+Y   F  +    P +++ F A+ G     V  D G
Sbjct: 12  LISLLAGSTSLAGPAMAEGEVNIYSYRQPFLIQ----PMLDR-FTAETGVRTNVVFTDQG 66

Query: 64  VSILNRLRLEGSNSKADVVLGLDNNLIEEAKQTGLLATHSVDTSKVTLPNGWSD---NTF 120
             ++ RL+ EG+NS ADVVL +D + + E     ++   S    +  +P    D     F
Sbjct: 67  --LVERLKAEGANSPADVVLTVDISRLNELVTAKVVRPVSSPVIEANIPAATRDPQGRWF 124

Query: 121 VPYDYGYFAFVYNKEKLANPPTSLKELVEKRDDLKVIYQDPRTSTPGQGLLLWMKSVYGD 180
                    F       A   TS  +L + R   +V  + P       GL+  M +  G 
Sbjct: 125 GLTTRARAIFAAKDRVPAGAVTSYADLADPRWKGRVCSR-PGDHVYNIGLISAMIAHDGV 183

Query: 181 QAPQAWKQLASKTVTVTKGWSEAYSM--FLGGEADLVLSYTTSPAYHL---IAEND---- 231
              +AW +     +    G S+   +     G  DL L  T    Y+L   +A+ D    
Sbjct: 184 DKTKAWLEGVKANLAQKPGGSDRSQVKAIKEGLCDLALVNT----YYLGAMLADPDQKAW 239

Query: 232 ARFATANFSE--GHYLQVEVA--AKVKSTKNGELADKFLQFILSNEFQSVIPTGNWMYPV 287
           A  AT  F +  GH   V V+  A   S  N + A K ++F+  +E Q +    N  +PV
Sbjct: 240 AESATMLFPDLSGHGTHVNVSGMAMTASAPNRDNALKLMEFLSGDEAQRLYAEANSEFPV 299