Pairwise Alignments

Query, 330 a.a., thiamine ABC transporter substrate binding subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., thiamine-binding periplasmic protein ThiB from Phaeobacter inhibens DSM 17395

 Score =  357 bits (916), Expect = e-103
 Identities = 187/325 (57%), Positives = 227/325 (69%), Gaps = 8/325 (2%)

Query: 8   VALATLCVASAASA-APTLTVYTYDSFAAEWGPAPAIEKAFEAQCGCDLQFVALDDGVSI 66
           V  A L  A+AA A  P L VYTYDSF ++WGP PA+EKAFEA CGCDL+ V   DG ++
Sbjct: 5   VLAAGLLGATAAYADTPELIVYTYDSFVSDWGPGPAVEKAFEATCGCDLKLVGAGDGAAL 64

Query: 67  LNRLRLEGSNSKADVVLGLDNNLIEEAKQTGLLATHSVDTSKVTLPNGWSDNTFVPYDYG 126
           L R++LEG+ S ADVVLGLD NL   AK TGL A H+V ++   LP  W D TF PYD+G
Sbjct: 65  LARVKLEGARSDADVVLGLDTNLTAAAKATGLFADHAV-SADYALPFAWEDATFAPYDWG 123

Query: 127 YFAFVYNKEKLANPPTSLKELVEKRDDLKVIYQDPRTSTPGQGLLLWMKSVYGDQAPQAW 186
           YFAFV+     A  P +  EL E   DLK++ QDPR+STPG GLL+W+K+ +GD+AP+ W
Sbjct: 124 YFAFVHKAGMGA--PANFAELAES--DLKIVIQDPRSSTPGLGLLMWVKAAHGDKAPEIW 179

Query: 187 KQLASKTVTVTKGWSEAYSMFLGGEADLVLSYTTSPAYHLIAENDARFATANFSEGHYLQ 246
             LA   +TVTKGWSEAY +FL GEAD+VLSYTTSPAYHLIAE D   A A F EGHY+Q
Sbjct: 180 DGLADNVLTVTKGWSEAYGLFLEGEADMVLSYTTSPAYHLIAEEDDSKAAAVFDEGHYMQ 239

Query: 247 VEVAAKVKSTKNGELADKFLQFILSNEFQSVIPTGNWMYPVT--AVELPKGFDTLAVPTQ 304
           VEVA K+ ++   ELAD+FL F++S+ FQSVIPT NWMYP    A  LPKGF+TL  P +
Sbjct: 240 VEVAGKLANSDQPELADQFLAFMVSDAFQSVIPTTNWMYPAVTPADGLPKGFETLVAPEK 299

Query: 305 SLSFSAQEVAQMRKPWIREWQQALS 329
           SL  S  E A +R   + EW  ALS
Sbjct: 300 SLLLSEDEAAALRDVALDEWLTALS 324