Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 271 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score = 68.6 bits (166), Expect = 3e-16
 Identities = 60/266 (22%), Positives = 116/266 (43%), Gaps = 26/266 (9%)

Query: 4   TPQLGFWVAAGVATFVLAALAALLWQS-PPFNLNLIWQDAYYRH-----VTQFSFYQAFW 57
           T  +  ++   +   VL +  +  W   PP    L W   ++ +         SF  A  
Sbjct: 20  TALIALFLLLPILFIVLLSFGSSQWLVFPPPGWTLKWYQQFFSNPDWMAAAMSSFKVAIL 79

Query: 58  STVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTL 117
           +T+ SV L +P A AL + RFPGRD L  +F + +++P+++    + A++   G+   TL
Sbjct: 80  TTLASVALGLPTAFALVRGRFPGRDFLYGVFTLPMIVPLVIIAVAVYALFLKLGYTG-TL 138

Query: 118 HSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFK 177
            S               +++HV+  LP+    ++ SL+             G SR Q   
Sbjct: 139 FS--------------FVVSHVIVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAIY 184

Query: 178 WVEWPRLRQQLPHVAGLVFMLCFTSFATVMA-LGGGPKATTIELAIYQAIKFDFD--LQI 234
            V +P +R  +  +AG +F    +    V++ +   P   T+ + ++  ++ D    + +
Sbjct: 185 KVTFPGIRPGM--MAGALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTLRQDLTPVIAV 242

Query: 235 GALLAIWQMLLCTLLTFTLQRFSHSR 260
            + L I   +L   +  TL+R + +R
Sbjct: 243 ASTLLIALSVLIMFIAATLRRRNEAR 268



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 47/235 (20%), Positives = 103/235 (43%), Gaps = 19/235 (8%)

Query: 291 ACVLVLPPLVMVVLAGLNSK-------------LGKVLTSGDFWSAVSHSLQVASLASSL 337
           A  L+LP L +V+L+  +S+               +  ++ D+ +A   S +VA L +  
Sbjct: 24  ALFLLLPILFIVLLSFGSSQWLVFPPPGWTLKWYQQFFSNPDWMAAAMSSFKVAILTTLA 83

Query: 338 ALASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTGLFLLLRNITDVFRLA 397
           ++A G+    T+ AL ++      + +  + TL ++ P ++++  ++ L   +     L 
Sbjct: 84  SVALGLP---TAFAL-VRGRFPGRDFLYGVFTLPMIVPLVIIAVAVYALFLKLGYTGTLF 139

Query: 398 YWIVVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSH 457
            ++V  V  ++ALP+ + ++   +    Q  E      G S  +    V +  +R  +  
Sbjct: 140 SFVVSHV--IVALPFTIISIINSLKLFDQSIEDAAVICGASRLQAIYKVTFPGIRPGMMA 197

Query: 458 AFAIGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSV 512
                FL+S  ++    +  S   +TLP+ ++  L        AV +  ++ +SV
Sbjct: 198 GALFAFLVSWDEVVLSVMMASPTLQTLPVKMWTTLRQDLTPVIAVASTLLIALSV 252