Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 264 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score = 63.9 bits (154), Expect = 7e-15
 Identities = 57/221 (25%), Positives = 92/221 (41%), Gaps = 33/221 (14%)

Query: 31  PPFNLNLIWQDAYYRHVTQF-SFYQ----AFWSTVLSVGLAIPVAHALSQRRFPGRDLLL 85
           P  + +L W  A +       SFY     AF S  L+  +A+P A A+++  FPGR+   
Sbjct: 40  PTTHFSLRWFKAVFERADFIDSFYNSLILAFVSATLATLIAVPAALAITRHTFPGRNFFN 99

Query: 86  KLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTLHSVGFPLPFSIYGLNG----ILLAHVLF 141
            LF   +++P LV    ++ +                   F++ G+NG    ++ AHVL 
Sbjct: 100 ALFLSPIIIPHLVLGVAMLRL-------------------FALMGVNGSFTWLIFAHVLV 140

Query: 142 NLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFT 201
             PY  RL+L +   I          LG  R+  F+ +  P +   LP VAG   +    
Sbjct: 141 ITPYVLRLVLAAAIGIDRSAEHAAESLGADRFTLFRQITLPMI---LPGVAGGWLLAFIN 197

Query: 202 SF--ATVMALGGGPKATTIELAIYQAIKFDFDLQIGALLAI 240
           SF   T+      P   T+ + +Y       D  + A+ A+
Sbjct: 198 SFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSAL 238



 Score = 35.0 bits (79), Expect = 3e-06
 Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 16/242 (6%)

Query: 293 VLVLPPLVMVVLAGLNSKLGKVLTSGDF----WSAVSHSLQ-VASLASSLALASGIAMLL 347
           + ++ PLV+V L     +    L +  F    + AV      + S  +SL LA   A L 
Sbjct: 17  IFMMAPLVVVCLVAFTPENTLSLPTTHFSLRWFKAVFERADFIDSFYNSLILAFVSATLA 76

Query: 348 TSRALRLKAAHRRAN--GVEWIATLIL---VTPGLVVSTGLFLL--LRNITDVFRLAYWI 400
           T  A+    A  R    G  +   L L   + P LV+   +  L  L  +   F    W+
Sbjct: 77  TLIAVPAALAITRHTFPGRNFFNALFLSPIIIPHLVLGVAMLRLFALMGVNGSFT---WL 133

Query: 401 VVAVNALMALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHAFA 460
           + A + L+  PYV++ +      + +  E    SLG   +  FR +    +   ++  + 
Sbjct: 134 IFA-HVLVITPYVLRLVLAAAIGIDRSAEHAAESLGADRFTLFRQITLPMILPGVAGGWL 192

Query: 461 IGFLLSMGDLSAIALFGSQDFRTLPLYLYQLLGSYQMDTAAVVALAMLIMSVGWFYVIER 520
           + F+ S  +++      S   +TLP+ +Y           A V+  ++ ++     +++R
Sbjct: 193 LAFINSFDEVTLSIFVTSPATQTLPVRMYVYATESIDPMMAAVSALVIALTAATMILLDR 252

Query: 521 LF 522
           ++
Sbjct: 253 VY 254