Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a

 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 11/249 (4%)

Query: 15  VATFVLAALAALLWQSPPFNLNLIWQDAYYRHVT---QFSFYQAFWSTVLSVGLAIPVAH 71
           ++  VL  LAA+   +     +  W       V    + SF  AF++ +++  +   +A 
Sbjct: 23  LSLIVLIPLAAMFVHAAQLTWDQFWTIITAPRVIAALKLSFGTAFYAALINGVIGTLLAW 82

Query: 72  ALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNSGFLAKTLHSVGFPLPFSIYGL 131
            L +  FPGR ++  +  +   LP  VA   L A+Y  +G++ +    +GF + ++    
Sbjct: 83  VLVRYTFPGRKVIDAMIDLPFALPTAVAGIALTALYAPNGWVGQFAADLGFKIAYTPL-- 140

Query: 132 NGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGMSRWQKFKWVEWPRLRQQLPHV 191
            GI LA     LP+  R +   L  IP E  +  A LG    Q F+ +  P L       
Sbjct: 141 -GITLALTFVTLPFVVRTVQPVLADIPREVEEAAACLGARPLQVFRHILVPALLPAWLTG 199

Query: 192 AGLVFMLCFTSFATVMALGGGPKATTIELAIYQAIKFD-FD----LQIGALLAIWQMLLC 246
             L F      + +V+ + G     T  L +   +K D +D      IG ++ +   +L 
Sbjct: 200 FALAFARGVGEYGSVIFIAGNMPMKTEILPLLIMVKLDQYDYTGATAIGVMMLVVSFILL 259

Query: 247 TLLTFTLQR 255
            L+    +R
Sbjct: 260 LLINLLQRR 268



 Score = 43.5 bits (101), Expect = 1e-08
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 23/239 (9%)

Query: 293 VLVLPPLVMVVLAGLNSKLGKVLTSGDFWSAVSHSLQVASLASSL------ALASG-IAM 345
           ++ L  +V++ LA +     + LT   FW+ ++    +A+L  S       AL +G I  
Sbjct: 20  LVYLSLIVLIPLAAMFVHAAQ-LTWDQFWTIITAPRVIAALKLSFGTAFYAALINGVIGT 78

Query: 346 LLTSRALRLKAAHRRANGVEWIATLILVTPGLVVSTGLFLLL-------RNITDV-FRLA 397
           LL    +R     R+   ++ +  L    P  V    L  L        +   D+ F++A
Sbjct: 79  LLAWVLVRYTFPGRKV--IDAMIDLPFALPTAVAGIALTALYAPNGWVGQFAADLGFKIA 136

Query: 398 YWIVVAVNAL--MALPYVVKTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPL 455
           Y  +    AL  + LP+VV+T+   +  + ++ E   A LG    + FR +   AL    
Sbjct: 137 YTPLGITLALTFVTLPFVVRTVQPVLADIPREVEEAAACLGARPLQVFRHILVPALLPAW 196

Query: 456 SHAFAIGFLLSMGDL-SAIALFGSQDFRT--LPLYLYQLLGSYQMDTAAVVALAMLIMS 511
              FA+ F   +G+  S I + G+   +T  LPL +   L  Y    A  + + ML++S
Sbjct: 197 LTGFALAFARGVGEYGSVIFIAGNMPMKTEILPLLIMVKLDQYDYTGATAIGVMMLVVS 255