Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 77.4 bits (189), Expect = 6e-19
 Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 4/172 (2%)

Query: 51  SFYQAFWSTVLSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLIAIYGNS 110
           S Y +  ST + +G +IP  +A+S+  FPG+ ++  +  + +  P LV    L+ ++G +
Sbjct: 53  SLYSSLISTGIVLGFSIPTGYAISRYSFPGKSIVKAILDLPIAFPELVLGLALLLLFGQT 112

Query: 111 GFLAKTLHSVGFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHKLCAHLGM 170
            F+   L   G  + F+  G   I++A +   LPYA R++  + + I      +   LG 
Sbjct: 113 -FIGDILEFFGIKVVFTKLG---IVVAQIFTALPYAIRIVCSTFQDINPRYELVSRSLGY 168

Query: 171 SRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGGGPKATTIELAI 222
           S ++ FK V  P  R  +   + + F  C  +F TV+ L GG    T  L I
Sbjct: 169 SEFETFKNVTLPMARSGIFASSIIAFARCMGTFGTVLMLAGGTYMYTETLPI 220



 Score = 43.9 bits (102), Expect = 7e-09
 Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 12/169 (7%)

Query: 364 VEWIATLILVTPGLVVSTGLFLL-----LRNITDVFRLAYWI----VVAVNALMALPYVV 414
           V+ I  L +  P LV+   L LL     + +I + F +        +V      ALPY +
Sbjct: 86  VKAILDLPIAFPELVLGLALLLLFGQTFIGDILEFFGIKVVFTKLGIVVAQIFTALPYAI 145

Query: 415 KTLSQPMWHLAQQYELLCASLGMSGWRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIA 474
           + +      +  +YEL+  SLG S +  F+ V     R  +  +  I F   MG    + 
Sbjct: 146 RIVCSTFQDINPRYELVSRSLGYSEFETFKNVTLPMARSGIFASSIIAFARCMGTFGTVL 205

Query: 475 LFGSQDF---RTLPLYLYQLLGSYQMDTAAVVALAMLIMSVGWFYVIER 520
           +     +    TLP+ LY  +    +  A    + +L++S     + E+
Sbjct: 206 MLAGGTYMYTETLPITLYLNMSYGNLGMAISSGIVLLMISFIAILIFEK 254