Pairwise Alignments

Query, 530 a.a., thiamine/thiamine pyrophosphate ABC transporter permease ThiP from Vibrio cholerae E7946 ATCC 55056

Subject, 226 a.a., molybdenum ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 60/225 (26%), Positives = 107/225 (47%), Gaps = 17/225 (7%)

Query: 53  YQAFWSTV--------LSVGLAIPVAHALSQRRFPGRDLLLKLFAMTLVLPVLVAIFGLI 104
           +QA W +V        + V L+I    AL+ R+F G+  +  L  + LVLP  V  + L+
Sbjct: 3   WQALWLSVKLSSITVLVLVPLSILAGRALAYRQFIGKSWVEALIMVPLVLPPTVIGYYLL 62

Query: 105 AIYGNSGFLAKTLHSV-GFPLPFSIYGLNGILLAHVLFNLPYASRLLLQSLEAIPSEQHK 163
              G+  +L + L  + G  L   ++  +G++LA VL N+P+A + + ++ EA+P +   
Sbjct: 63  VGLGSQSWLGQWLERLTGQQL---VFHFSGLVLASVLVNIPFALQPIQRAFEAVPHDVRD 119

Query: 164 LCAHLGMSRWQKFKWVEWPRLRQQLPHVAGLVFMLCFTSFATVMALGG--GPKATTIELA 221
             A  GMS+ +    +E P +   +     L F      F  V+ +GG    +  TI ++
Sbjct: 120 AAACCGMSKLKILLKIELPMVWPGVLTAIVLCFSHVLGEFGVVLMMGGNIAGETKTISIS 179

Query: 222 IYQAIK-FDFDL--QIGALLAIWQMLLCTLLTFTLQRFSHSRPMN 263
           IY +++ FDF     +  +L ++ +    L T   +R    R  N
Sbjct: 180 IYDSVQAFDFGAAGTMSLVLLLFAITALALTTSLSRRLGGQRGAN 224



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 38/209 (18%), Positives = 87/209 (41%), Gaps = 24/209 (11%)

Query: 321 WSAVSHSLQVASLASSLALASGIAMLLTSRALRLKAAHRRANGVEWIATLILVTPGLVVS 380
           W A+  S++++S+   + +   I   L  RAL    A+R+  G  W+  LI+V   L  +
Sbjct: 3   WQALWLSVKLSSITVLVLVPLSI---LAGRAL----AYRQFIGKSWVEALIMVPLVLPPT 55

Query: 381 TGLFLLLRNITDVFRLAYWI--------------VVAVNALMALPYVVKTLSQPMWHLAQ 426
              + LL  +     L  W+              +V  + L+ +P+ ++ + +    +  
Sbjct: 56  VIGYYLLVGLGSQSWLGQWLERLTGQQLVFHFSGLVLASVLVNIPFALQPIQRAFEAVPH 115

Query: 427 QYELLCASLGMSGWRRFRLVEWRALRKPLSHAFAIGFLLSMGDLSAIALFGSQ---DFRT 483
                 A  GMS  +    +E   +   +  A  + F   +G+   + + G     + +T
Sbjct: 116 DVRDAAACCGMSKLKILLKIELPMVWPGVLTAIVLCFSHVLGEFGVVLMMGGNIAGETKT 175

Query: 484 LPLYLYQLLGSYQMDTAAVVALAMLIMSV 512
           + + +Y  + ++    A  ++L +L+ ++
Sbjct: 176 ISISIYDSVQAFDFGAAGTMSLVLLLFAI 204