Pairwise Alignments

Query, 286 a.a., RNase adaptor protein RapZ from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  317 bits (812), Expect = 2e-91
 Identities = 154/282 (54%), Positives = 213/282 (75%), Gaps = 2/282 (0%)

Query: 1   MRLIVVSGQSGAGKSVALRVLEDLGYYCVDNLPVSLLTAFIQSVQGSQQNVAVSIDIRNL 60
           M+L++VSG+SG+GKSVALRVLEDLGYYCVDNLP+ ++ + ++ ++G    VA+S+D+RN+
Sbjct: 1   MKLVLVSGRSGSGKSVALRVLEDLGYYCVDNLPLQMMESLLEQLKGRSDLVAISVDVRNM 60

Query: 61  PKEPSLVQDVLDQLKQNNDVSMLFLDASKETLLKRYSETRRIHPLSLSQSKPSLAQAIEL 120
           P E   ++  L +L ++ ++   FL++S   LLKRYSETRR+HPLS  +SK SL +AI+L
Sbjct: 61  PSEEIQLEKQLAKLPKDTEILSFFLNSSDNVLLKRYSETRRLHPLS--RSKVSLKEAIQL 118

Query: 121 EKQLLGPLKEQADLLLDSSNQSLHELSETVRMRIEGRERKDLVMVFQSFGFKYGLPTDAD 180
           E +LL P+ +  D  +D+SN +++ELS+ VR  + G   K+LV+ F+SFGFKYG+PT+AD
Sbjct: 119 EGKLLDPIAKLVDHYIDTSNLNIYELSDKVREILLGTVDKELVINFESFGFKYGMPTEAD 178

Query: 181 YVFDVRFLPNPHWEPDLRPLTGLDAPIKSFLEGHSEVMELKQQIQKFFEYWLPMLEKNNR 240
           ++FDVRFLPNPHWE +LRPLTGLD P++ FL     V +   QI+   E WLP LE+NNR
Sbjct: 179 FMFDVRFLPNPHWETELRPLTGLDEPVQQFLSQQPLVNKFIWQIENLLETWLPHLERNNR 238

Query: 241 SYLTIAIGCTGGKHRSVYLTQQLGEYFAQLGHQVQLRHTSLE 282
           SYLTIAIGCTGG+HRSVY+T QL + F +  H+VQ RH  L+
Sbjct: 239 SYLTIAIGCTGGQHRSVYVTDQLAKLFNKGKHKVQARHRELK 280