Pairwise Alignments

Query, 286 a.a., RNase adaptor protein RapZ from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., conserved hypothetical protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  188 bits (478), Expect = 1e-52
 Identities = 107/291 (36%), Positives = 166/291 (57%), Gaps = 18/291 (6%)

Query: 3   LIVVSGQSGAGKSVALRVLEDLGYYCVDNLPVSLLTAFIQSVQGSQ----QNVAVSIDIR 58
           +++VSG SGAGKS  L V EDL Y+ VD LPV L    ++ +        Q + + +D+R
Sbjct: 18  VLIVSGLSGAGKSTVLNVFEDLRYFTVDGLPVRLAPDMVRVLDAQALEQYQGIVLGMDLR 77

Query: 59  NLPKEPSLVQDVLDQLKQNNDVS----MLFLDASKETLLKRYSETRRIHPLSLSQSKPSL 114
               E   VQ     L +  ++     +LF++A +  L++RY+ TRR HPL        L
Sbjct: 78  ----EAEFVQQFEQALARLQEMGVRPVLLFIEAEQGELMRRYATTRRPHPLE--SEGMGL 131

Query: 115 AQAIELEKQLLGPLKEQADLLLDSSNQSLHELSETVRMR---IEGRERKDLVMVFQSFGF 171
             A+  E++ L P++E ADL+ D+++ S+H+L   ++ R   ++GR R   V +  SFG+
Sbjct: 132 ELALAEERRRLAPVREAADLVFDTTSFSIHDLRRVIQRRWSSLKGRMRSLRVNII-SFGY 190

Query: 172 KYGLPTDADYVFDVRFLPNPHWEPDLRPLTGLDAPIKSFLEGHSEVMELKQQIQKFFEYW 231
           KYG+P +AD VFD+RFLPNP+++  LRP +GLDAP+  ++ G       + +   F  Y 
Sbjct: 191 KYGVPKEADLVFDLRFLPNPYFDTSLRPQSGLDAPVVEYVFGTDSARTFRDRFIDFMTYL 250

Query: 232 LPMLEKNNRSYLTIAIGCTGGKHRSVYLTQQLGEYFAQLGHQVQLRHTSLE 282
           LP+ E   R  + +AIGCTGG+HRSV   + L +   +  + V + H  LE
Sbjct: 251 LPLYEAEGRYRIAVAIGCTGGRHRSVATAEALLDVLRKSDYAVTIEHRHLE 301