Pairwise Alignments

Query, 286 a.a., RNase adaptor protein RapZ from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., hypothetical protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  184 bits (468), Expect = 2e-51
 Identities = 103/285 (36%), Positives = 159/285 (55%), Gaps = 6/285 (2%)

Query: 2   RLIVVSGQSGAGKSVALRVLEDLGYYCVDNLPVSLLTAFIQSVQGSQQNVAVSIDIRNLP 61
           ++++V+G SGAG++ A+R LEDLG+  +DN+P+SL+   +     ++  +A+ +D R   
Sbjct: 14  KIVLVTGPSGAGRTTAIRALEDLGFEAIDNMPISLVPRLLDGPPLARP-LALGLDARTRD 72

Query: 62  KEPSLVQDVLDQLKQNN--DVSMLFLDASKETLLKRYSETRRIHPLSLSQSKPSLAQAIE 119
              + V D+L  L ++   D  +LFLDAS   L +R+SETRR HPL+  +S       I 
Sbjct: 73  FSVTAVADLLHLLAEDPRADAQLLFLDASPRVLTRRFSETRRRHPLAPLESP---MDGIA 129

Query: 120 LEKQLLGPLKEQADLLLDSSNQSLHELSETVRMRIEGRERKDLVMVFQSFGFKYGLPTDA 179
            E  LL P++ +AD+++D+S  S H+L   +      R+   L +  QSF +K G+P   
Sbjct: 130 RETDLLAPIRARADVVIDTSELSPHDLRAEMLRWFGDRDSLRLAITVQSFSYKRGVPQGT 189

Query: 180 DYVFDVRFLPNPHWEPDLRPLTGLDAPIKSFLEGHSEVMELKQQIQKFFEYWLPMLEKNN 239
           D VFDVRFL NP+WE  LR L G DA ++ ++            I       LP   +  
Sbjct: 190 DMVFDVRFLRNPYWEDTLRRLDGRDARVQDYVSADPRFDSFFDNIASLVRLLLPAYREEG 249

Query: 240 RSYLTIAIGCTGGKHRSVYLTQQLGEYFAQLGHQVQLRHTSLEKQ 284
           +S+L+I  GCTGG+HRSV + ++L       G QV  RH  L ++
Sbjct: 250 KSHLSIGFGCTGGQHRSVTVAEKLSAALVAEGWQVSNRHLELSRR 294