Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., RNA polymerase factor sigma-54 from Rhodanobacter denitrificans FW104-10B01

 Score =  414 bits (1063), Expect = e-120
 Identities = 239/494 (48%), Positives = 319/494 (64%), Gaps = 18/494 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MKP+LQ +L QQL +TPQLQQAIRLLQLS L+L+ E+++  ESNPLLE  E  ++  +L+
Sbjct: 1   MKPALQFRLHQQLTLTPQLQQAIRLLQLSQLELEAELRQIAESNPLLEFAEEVEDDETLE 60

Query: 61  SVRMTEESPREPEELY---EPEPQDSSDLIEKSEIS----AELEMDTTWDEVYSANTGST 113
           S         EPE  Y   E     SSD  E S+ S    AE  +D +   V S+ +  +
Sbjct: 61  S--------SEPESDYPSVEAVAASSSDDGEASDWSDGGVAETPIDFSSSSVGSSGSSGS 112

Query: 114 GLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEI 173
           G   D+D    Q    +TLQ +L WQL+L  F+     IA  LIDA++  GYL   LE I
Sbjct: 113 GTRGDEDFEP-QNAAPETLQQHLLWQLNLASFNPRQHLIATVLIDALNPAGYLAEGLEAI 171

Query: 174 QESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLL 232
             +L +D D  + EIE VR+R+Q FDP GV S++L+DCL +QL  +  DTP  E A  ++
Sbjct: 172 LAALPADLDASIAEIEEVRRRLQGFDPAGVGSIDLRDCLRVQLEQFDPDTPQRELALRIV 231

Query: 233 SQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYK 292
              +D L   D   + +  +  E+D+     LI+ LDPRPG+ +     EYV PDV   +
Sbjct: 232 DDELDLLARNDIARLARRLRAGEDDVAAAAVLIRSLDPRPGAALDATPVEYVAPDVYALR 291

Query: 293 EQGRWLVTINPDSVPKLKINQQYADLM-RGNNAESNYIRTNLQEAKWLIKSLESRNETLL 351
           +  RW V++NPD+ P+L +NQ Y  L+ +    +++++R  LQEA+WLIKSLESR ETLL
Sbjct: 292 DGSRWRVSLNPDAQPRLGLNQHYCGLIAQARGEDASWMRGQLQEARWLIKSLESRAETLL 351

Query: 352 KVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKY 411
           KVA+ IV  Q  F +YG EAM P+VL +VA  V MHESTISRVTT+KY+HTPRG FELKY
Sbjct: 352 KVAEAIVRRQSAFLDYGPEAMHPLVLREVAEEVGMHESTISRVTTRKYLHTPRGTFELKY 411

Query: 412 FFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKY 471
           FFSS VST++GG  S+TAI+A+++KL+ AE+  KPLSD  IA  L  +GIQVARRT+AKY
Sbjct: 412 FFSSGVSTEDGGSASATAIQAMLRKLIEAEDVRKPLSDLAIAEELQRKGIQVARRTVAKY 471

Query: 472 RESLGIAPSSQRKR 485
           RE L I  SS+R+R
Sbjct: 472 REGLRIPTSSERQR 485