Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., RNA polymerase sigma-54 factor RpoN from Pseudomonas fluorescens FW300-N2E2

 Score =  548 bits (1412), Expect = e-160
 Identities = 292/491 (59%), Positives = 365/491 (74%), Gaps = 14/491 (2%)

Query: 9   LGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLDSVRMTEES 68
           +GQQL MTPQLQQAIRLLQLSTLDLQQEIQEALESNP+LE +E  D+  + D +    E 
Sbjct: 1   MGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNTDPLADNVEQ 60

Query: 69  PREPEELYEPEPQDSSDLIEKSE-------ISAELEMDTTWDEVYSANTGSTGLALDDDA 121
            +   E+ EP  Q+++  ++  E       I  EL +DT W++VY  +  S   + DDD 
Sbjct: 61  -KTNTEIPEPTYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLPSS-DDDE 118

Query: 122 PIYQGETT--QTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEEIQESLRS 179
             +   T+  ++LQ +L WQL+L P SD DR IAV LID I++ GYL  +LEEI E+   
Sbjct: 119 WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEILEAFDP 178

Query: 180 D-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLLSQYIDD 238
           + DIELDEIEAV  RIQQF+P G+ + NL +CLLLQL      TPWL EA+ L++ YID 
Sbjct: 179 ELDIELDEIEAVLHRIQQFEPAGIGARNLGECLLLQLRQLSAKTPWLAEAKRLVTDYIDL 238

Query: 239 LGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYKEQGRWL 298
           LG RDY  +++  KLKE++LR++++L+Q L+PRPGS+I     EYV+PDV V K   RWL
Sbjct: 239 LGGRDYSQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEPEYVVPDVIVRKHNDRWL 298

Query: 299 VTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSLESRNETLLKVAKC 356
           V +N +SVPKL++N QYA  ++    +A++ ++R  LQEA+W IKSL+SRNETL+KVA  
Sbjct: 299 VELNQESVPKLRVNAQYAGFVKRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQ 358

Query: 357 IVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSH 416
           IVEHQ  F EYG+EAMKP+VL+D+A AV MHESTISRVTTQK+MHTPRGI+ELKYFFSSH
Sbjct: 359 IVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSH 418

Query: 417 VSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAKYRESLG 476
           VST  GGECSSTAIRA+IKKLVAAEN  KPLSDSKIA LL  QGIQVARRT+AKYRESLG
Sbjct: 419 VSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLG 478

Query: 477 IAPSSQRKRLL 487
           IAPSS+RKRL+
Sbjct: 479 IAPSSERKRLM 489