Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., RNA polymerase sigma-54 factor from Pseudomonas stutzeri RCH2

 Score =  550 bits (1418), Expect = e-161
 Identities = 294/504 (58%), Positives = 373/504 (74%), Gaps = 19/504 (3%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MKPSL LK+GQQL MTPQLQQAIRLLQLSTLDLQQEIQEAL+SNP+LE EE+ D+  S D
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPMLEREEDGDDFDSSD 60

Query: 61  SVRMTEESPREP--------EELYEPEPQDSSDLIEKSE----ISAELEMDTTWDEVYSA 108
            +    + P +         E  YE EP  S +  +  +    I +EL +DT W+++Y  
Sbjct: 61  PMAEAADRPGDTGTEKSSSQESTYE-EPSHSGESADDGDWGERIPSELPVDTAWEDIYQT 119

Query: 109 NTGSTGLALDDDAPIYQGETTQ--TLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYL 166
           +  S   + DDD   +   T+   +LQ +L WQL+L P SD DR IA  LID I+D GYL
Sbjct: 120 SASSLP-SNDDDEWDFTSRTSNGISLQSHLLWQLNLAPMSDTDRLIATTLIDCINDQGYL 178

Query: 167 TVSLEEIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWL 225
             +L+EI +S   + +IELDE+E V +RIQQF+P G+ + +L++CLLLQL      TPWL
Sbjct: 179 EETLQEIVDSFDPELEIELDEVEVVLRRIQQFEPAGIGARDLRECLLLQLRQLSERTPWL 238

Query: 226 EEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVI 285
            EA+ L+S Y+D LG+RDY  +++  KLKE++LR++++LIQ L+PRPGS+I     EYV+
Sbjct: 239 SEAQRLVSDYLDILGSRDYSLLMRRMKLKEDELRQVIELIQSLNPRPGSQIEASEPEYVV 298

Query: 286 PDVSVYKEQGRWLVTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSL 343
           PDV V K   RWLV +N +++P+L++N QYA  ++   ++A++ ++R  LQEA+W IKSL
Sbjct: 299 PDVIVRKHNDRWLVELNQEAMPRLRVNAQYAGFVKRADSSADNTFMRNQLQEARWFIKSL 358

Query: 344 ESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTP 403
            SRNETL+KVA  IVEHQ  F E+G+EAMKP+VL+D+A AV MHESTISRVTTQKYMHTP
Sbjct: 359 LSRNETLMKVATQIVEHQRAFLEHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTP 418

Query: 404 RGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQV 463
           RGI+ELKYFFSSHVST  GGECSSTAIRA+IKKLVAAEN  KPLSDSKIA LL  QGIQV
Sbjct: 419 RGIYELKYFFSSHVSTAEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQV 478

Query: 464 ARRTIAKYRESLGIAPSSQRKRLL 487
           ARRT+AKYRESLGIAPSS+RKRLL
Sbjct: 479 ARRTVAKYRESLGIAPSSERKRLL 502