Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 511 a.a., RNA polymerase, sigma 54 subunit, RpoN/SigL from Pseudomonas syringae pv. syringae B728a

 Score =  564 bits (1454), Expect = e-165
 Identities = 300/499 (60%), Positives = 375/499 (75%), Gaps = 14/499 (2%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           MKPSL L++GQQL MTPQLQQAIRLLQLSTLDLQQEIQEALESNP+LE +E  D+    D
Sbjct: 15  MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDHSD 74

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSE-------ISAELEMDTTWDEVYSANTGST 113
            +    E    P+ + EP  Q+S+  ++  E       I  EL +DT W+++Y  +  S 
Sbjct: 75  PLADNIEQKPNPD-VQEPTYQESAPTVDNLEEGEWNERIPNELPVDTAWEDIYQTSASSL 133

Query: 114 GLALDDDAPIYQGETT--QTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLE 171
             + DDD   +   T+  ++LQ +L WQL++ P SD DR +AV LID I++ GYL  +L+
Sbjct: 134 P-SNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLD 192

Query: 172 EIQESLRSD-DIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARL 230
           EI ES   + DIELDEIEAV  RIQQF+P G+ + NL +CLLLQL   P  TPWL EA+ 
Sbjct: 193 EILESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLTEAQR 252

Query: 231 LLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSV 290
           L+S YID LG+RDY  +++  KLKE++LR++++L+Q L+PRPGS+I    AEYVIPDV V
Sbjct: 253 LVSDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVIPDVIV 312

Query: 291 YKEQGRWLVTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSLESRNE 348
            K+  RWLV +N +SVP+L++N QYA  +R    +A++ ++R  LQEA+W IKSL+SRNE
Sbjct: 313 RKDNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNE 372

Query: 349 TLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFE 408
           TL+KVA  IVEHQ  F EYG+EAMKP+VL+D+A AV MHESTISRVTTQK+MHTPRGI+E
Sbjct: 373 TLMKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYE 432

Query: 409 LKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTI 468
           LKYFFSSHVST  GGECSSTAIRA+IKKLVAAEN  KPLSDSKIA LL  QGIQVARRT+
Sbjct: 433 LKYFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTV 492

Query: 469 AKYRESLGIAPSSQRKRLL 487
           AKYRESLGIAPSS+RKRL+
Sbjct: 493 AKYRESLGIAPSSERKRLM 511