Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 514 a.a., RNA polymerase factor sigma-54 from Sinorhizobium meliloti 1021

 Score =  265 bits (676), Expect = 4e-75
 Identities = 181/514 (35%), Positives = 272/514 (52%), Gaps = 42/514 (8%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVE--------EN 52
           +  SL L+  Q L MTPQL Q+I+LLQ++ L+L   I + +E NPLLEV+        + 
Sbjct: 3   LSASLHLRQSQSLVMTPQLMQSIQLLQMNHLELSHFIAQEVEKNPLLEVQPADEPTISDR 62

Query: 53  QDEAPSLDSVRMTEESPREPEELYEPEPQDSSDLIEK---SEISAELEMDTT-------- 101
           +D  P         +      +LY+     S + + +   ++ +     DT         
Sbjct: 63  EDAGPHPAETGGETDEAAGQSDLYDSAMSRSGERLSEGLDADFANVFPDDTAPQRADAPE 122

Query: 102 ----WDEVYSANTGSTGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALI 157
               W  +  A     G  LDD    + G   +TL++ L  QL     +  DR IA   I
Sbjct: 123 LLGQWKSMPGAGDAE-GYDLDD----FVGGR-KTLRETLAEQLPFALSAVSDRLIARYFI 176

Query: 158 DAIDDYGYLTVSLEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTT 217
           D +DD GYL   L E  E+L +     +++  V   +QQFDP GV +  L +CL +QL  
Sbjct: 177 DQLDDAGYLHADLAETAETLGAAG---EDVARVLHVLQQFDPPGVFARTLGECLAIQLRA 233

Query: 218 YPCDTPWLEEARLLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIA 277
                P +E     L   ++ L  RD+ ++ K   + EEDL ++L  I++LDP+PG+   
Sbjct: 234 RNRLDPAMEA----LVANLELLARRDFASLKKICGVDEEDLIDMLAEIRKLDPKPGTSFE 289

Query: 278 QDHAEYVIPDVSVYKE-QGRWLVTINPDSVPKLKINQQY----ADLMRGNNAESNYIRTN 332
               E +IPDV V     G WLV +NPD++P++ +N  Y    +   R N+ E  ++   
Sbjct: 290 TGVFEAIIPDVVVRAAPDGGWLVELNPDALPRVLVNHDYFTEISRSSRKNSGEQAFLNEC 349

Query: 333 LQEAKWLIKSLESRNETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTIS 392
           LQ A WL +SL+ R  T++KVA  IV  Q  F  +G   ++P+ L  VA A++MHEST+S
Sbjct: 350 LQNANWLTRSLDQRARTIMKVASEIVRQQDAFLIHGVGHLRPLNLRIVADAIKMHESTVS 409

Query: 393 RVTTQKYMHTPRGIFELKYFFSSHV-STDNGGECSSTAIRALIKKLVAAENPAKPLSDSK 451
           RVT+ KYM TPRG+FELKYFF+  + S +NG   S+ ++R  I+ ++  E+    LSD  
Sbjct: 410 RVTSNKYMLTPRGLFELKYFFTVSIGSAENGDAHSAESVRHRIRTMINQESADAVLSDDD 469

Query: 452 IATLLADQGIQVARRTIAKYRESLGIAPSSQRKR 485
           I  +L   G+ +ARRT+AKYRE++ I  S QR+R
Sbjct: 470 IVDVLKQAGVDIARRTVAKYREAMSIPSSVQRRR 503