Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., RNA polymerase factor sigma-54 (RefSeq) from Shewanella amazonensis SB2B

 Score =  592 bits (1526), Expect = e-173
 Identities = 310/496 (62%), Positives = 387/496 (78%), Gaps = 13/496 (2%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEE----NQDEA 56
           MK SLQLKLGQQL MTPQLQQAIRLLQLS+L+LQQEIQ+AL++NPLLE+++    +Q +A
Sbjct: 1   MKASLQLKLGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDANPLLELDDELGSDQFDA 60

Query: 57  PSLDSV---RMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDTTWDEVY-SANTGS 112
              D     + ++ES     +  +    ++SD I +  +  EL MDTTWDEV+ +A    
Sbjct: 61  DGGDKEFDDQFSQESVSN--DTTDSASLETSDAINQQSMPDELPMDTTWDEVFTAAPVSG 118

Query: 113 TGLALDDDAPIYQGETTQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVSLEE 172
            G+  +DD P +QGET++ L ++L WQ +LTPFSD D  IA A+IDAIDD GYLT SLEE
Sbjct: 119 PGIRGEDDMP-FQGETSEGLYEHLEWQKNLTPFSDTDLAIATAIIDAIDDKGYLTQSLEE 177

Query: 173 IQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEARLLL 232
           I E++  D++ELDE+EAV KRIQ FDP GVA+ +L +CLL+QL  +P DTP L+ A+LL+
Sbjct: 178 ILEAVGDDEVELDEVEAVLKRIQHFDPIGVAARDLAECLLIQLGQFPADTPHLDNAKLLI 237

Query: 233 SQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVSVYK 292
             ++D + NRD++T++++T+LKEE+LR+ + LIQ L+PRPG  +     EYVIPDVSV K
Sbjct: 238 RDHLDLIANRDFRTLMRKTRLKEEELRDAIVLIQGLNPRPGESVTSTKDEYVIPDVSVSK 297

Query: 293 EQGRWLVTINPDSVPKLKINQQYADLMR--GNNAESNYIRTNLQEAKWLIKSLESRNETL 350
           + GRW+V +NPD +PKL +NQQYA + R   N A+S +IR +LQEAKW IKSLESRN+TL
Sbjct: 298 KNGRWVVELNPDCMPKLSVNQQYAAMARTSRNQADSQFIRGHLQEAKWFIKSLESRNDTL 357

Query: 351 LKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGIFELK 410
           LKVA CIV+ Q  FFEYGEEAMKPMVLND+A AVEMHESTISRVTTQKYMHTPRGIFELK
Sbjct: 358 LKVANCIVQFQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELK 417

Query: 411 YFFSSHVSTDNGGECSSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVARRTIAK 470
           YFFSSHV T++GGECSSTAIRA IKKLVAAEN  KPLSDSK+A LLA+QGI VARRTIAK
Sbjct: 418 YFFSSHVGTEDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAELLAEQGINVARRTIAK 477

Query: 471 YRESLGIAPSSQRKRL 486
           YRE++ I PS+QRK L
Sbjct: 478 YREAMLIPPSNQRKSL 493