Pairwise Alignments

Query, 487 a.a., RNA polymerase sigma-54 factor from Vibrio cholerae E7946 ATCC 55056

Subject, 500 a.a., Sigma-54 (RpoN) (NCBI) from Rhodospirillum rubrum S1H

 Score =  312 bits (799), Expect = 2e-89
 Identities = 194/500 (38%), Positives = 294/500 (58%), Gaps = 24/500 (4%)

Query: 1   MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALESNPLLEVEENQDEAPSLD 60
           M P L L+  Q L MTPQLQQAI+LLQLS ++L   + + LE NPLLE +++ D +P  D
Sbjct: 3   MSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLERDDSADVSPEPD 62

Query: 61  SVRMTEESPREPEELYEPEPQDSSDLIEKSEISAELEMDT---TWDEV---YSANT---- 110
             R  E +     ++ +  P +++D     + +   E  T   +W E    + A T    
Sbjct: 63  --RREERADSAETQVLDVVPGNTTDAPLDQDFNTAAEEGTPSDSWAEAGGGFDAGTPWGS 120

Query: 111 GSTGLALDDDAPIYQGET-TQTLQDYLHWQLDLTPFSDVDRTIAVALIDAIDDYGYLTVS 169
           G++G   D D  + Q     ++L+D+L  Q+ L   +  DR IA  L+  +DD GYL  +
Sbjct: 121 GTSGSFDDSDGGLEQMVAGPRSLRDHLSDQITLDLKTSADRLIAHHLMGMLDDAGYLIGA 180

Query: 170 LEEIQESLRSDDIELDEIEAVRKRIQQFDPFGVASLNLQDCLLLQLTTYPCDTPWLEEAR 229
           L+E+ +SL      L E+E V  R+Q  DP G+ + +L++CL +QL     D   L+ A 
Sbjct: 181 LDEVADSL---GCSLAEVERVLGRLQAMDPPGLFARSLKECLAIQLA----DLNRLDPAM 233

Query: 230 LLLSQYIDDLGNRDYKTILKETKLKEEDLREILQLIQQLDPRPGSRIAQDHAEYVIPDVS 289
             L  +++ LG RD   +LK   +  ED+  ++  I+ LDP+P  R      + VIPDV 
Sbjct: 234 QALLDHLEMLGRRDIAGLLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQPVIPDVL 293

Query: 290 VYKEQ-GRWLVTINPDSVPKLKINQQY-ADLMRGNNAESN-YIRTNLQEAKWLIKSLESR 346
           +  +  G WLV +N +++P++ IN +Y A L R  + E+  ++  NL  A WL+KSL+ R
Sbjct: 294 MRPDPAGGWLVELNSETLPRVLINNRYHARLSRSGDKETRTFLSENLATANWLVKSLDQR 353

Query: 347 NETLLKVAKCIVEHQHDFFEYGEEAMKPMVLNDVAMAVEMHESTISRVTTQKYMHTPRGI 406
             T+LKVA  +V  Q  FF +G   ++P++L D+A A+EMHEST+SRVT+ KY+ +PRGI
Sbjct: 354 ANTILKVATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSRVTSNKYIASPRGI 413

Query: 407 FELKYFFSSHVSTDNGGEC-SSTAIRALIKKLVAAENPAKPLSDSKIATLLADQGIQVAR 465
           FELKYFF+  +   +GGE  S+ A+R  I+ L+ AE+P + LSD K+  +L   GI +AR
Sbjct: 414 FELKYFFTQAIGAADGGESHSAEAVRDRIRSLIEAESPDQVLSDDKLVDILRTDGIDIAR 473

Query: 466 RTIAKYRESLGIAPSSQRKR 485
           RT+AKYRE + IA S +RK+
Sbjct: 474 RTVAKYREGMRIASSVRRKK 493